Error executing process > 'Run_LncPipeReporter (Generating report ...)'>duplicate 'row.names' are not allowed

[bihuaf]

LncRNAanalysisPipe was performed using your test data, but It can not be completed.

N E X T F L O W ~ version 20.04.1 Launching LncRNAanalysisPipe.nf [prickly_poitras] - revision: 32d1fd7240 This workflow requires Nextflow version 0.26 or greater -- You are running version 20.04.1 [35mYou are running LncPipe with the following parameters: [35mChecking parameters ... [33m===================================== [33mSpecies: human [33mFastq file extension: Fastq/{1,2}.fastq.gz [33mSingle end : false [33mskip annotation process: false [33mInput folder: ./ [33mOutput folder: ./ [33mGenome sequence location: Genome/chr22.fa [33mSTAR index path:
[33mHISAT2 index path: Genome/hisat_index/.ht2 [33mbowtie/tophat index path:
[33mGENCODE annotation location: Genome/gencode.chr22.gtf [33mlncipedia annotation location: Genome/lncipedia.chr22.gtf [33m=====================================

Combining known annotations from GTFs Analysis from fastq file Perform quality control of raw fastq files [- ] process > combine_public_annotation - [- ] process > combine_public_annotation [ 0%] 0 of 1 [- ] process > Run_FastP - [- ] process > fastq_hisat2_alignmentFor... - [- ] process > StringTie_assembly - executor > local (2) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ [24/1e240c] process > Run_FastP (uPDLSCs1) [ 0%] 0 of 4 executor > local (3) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ [24/1e240c] process > Run_FastP (uPDLSCs1) [ 25%] 1 of 4 executor > local (4) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ executor > local (5) executor > local (5) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ executor > local (6) executor > local (6) executor > local (8) executor > local (8) executor > local (10) executor > local (13) executor > local (14)

ERROR ### Max cpus '[:]' is not valid! Using default value: 8

executor > local (16) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ executor > local (18) executor > local (19) executor > local (20) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ [8f/7c0b7e] process > Run_FastP (dPDLSCs1) [100%] 4 of 4 ✔ executor > local (22) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ [8f/7c0b7e] process > Run_FastP (dPDLSCs1) [100%] 4 of 4 ✔ [e9/d0bd78] process > fastq_hisat2_alignmentFor... [100%] 4 of 4 ✔ [3e/b31271] process > StringTie_assembly (dPDLSCs1) [100%] 4 of 4 ✔ [af/d8fbc5] process > StringTie_merge_assembled_g... [100%] 1 of 1 ✔ [c7/2b8927] process > Merge_assembled_gtf_with_GE... [100%] 1 of 1 ✔ [42/35b7df] process > Identify_novel_lncRNAwith... [100%] 1 of 1 ✔ executor > local (23) executor > local (27) executor > local (29) executor > local (30) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ [8f/7c0b7e] process > Run_FastP (dPDLSCs1) [100%] 4 of 4 ✔ [e9/d0bd78] process > fastq_hisat2_alignmentFor... [100%] 4 of 4 ✔ [3e/b31271] process > StringTie_assembly (dPDLSCs1) [100%] 4 of 4 ✔ [af/d8fbc5] process > StringTie_merge_assembled_g... [100%] 1 of 1 ✔ [c7/2b8927] process > Merge_assembled_gtf_with_GE... [100%] 1 of 1 ✔ [42/35b7df] process > Identify_novel_lncRNAwith... [100%] 1 of 1 ✔ [70/f7a69a] process > Predict_coding_abilities_by... [100%] 1 of 1 ✔ [34/ce3f0b] process > Predict_coding_abilities_by... [100%] 1 of 1 ✔ [44/794ba5] process > Filter_lncRNA_by_coding_pot... [100%] 1 of 1 ✔ [6c/ed2818] process > Summary_renaming_and_classi... [100%] 1 of 1 ✔ [89/3136d0] process > Rerun_CPAT_to_evaluate_lncR... [100%] 1 of 1 ✔ [92/7e9c39] process > Rerun_CPAT_to_evaluate_codi... [100%] 1 of 1 ✔ [cb/109152] process > Secondary_basic_statistic (1) [100%] 1 of 1 ✔ [15/c3bacb] process > Build_kallisto_index_of_GTF... [100%] 1 of 1 ✔ [d6/465f86] process > Run_kallisto_for_quantifica... [100%] 4 of 4 ✔ [f6/9dd13d] process > Get_kallisto_matrix (Kallisto) [100%] 1 of 1 ✔ [9a/da60f7] process > Run_LncPipeReporter (Genera... [ 0%] 0 of 1 Error executing process > 'Run_LncPipeReporter (Generating report ...)'

Caused by: Process Run_LncPipeReporter (Generating report ...) terminated with an error exit status (1)

Command executed:

perl /home/skyhorse/Desktop/lncpipe/LncPipe/bin/modifyDesign.pl design.file > design.matrix Rscript -e "library(LncPipeReporter);run_reporter(input='.', output = 'reporter.html',output_dir='./LncPipeReports',de.method='edger',theme = 'npg',cdf.percent = 10,max.lncrna.len = 10000,min.expressed.sample = 50, ask = FALSE)"

Command exit status: 1

Command output: ordinary text without R code

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label: lncRNA table

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|.................................................................| 100%
ordinary text without R code

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|.............................................................    |  94%
ordinary text without R code

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|.................................................................| 100%

label: DE-child (with options) List of 2 $ child: language switch(de.method, edger = "edger.Rmd", deseq2 = "deseq2.Rmd", noiseq = "noiseq.Rmd") $ eval : language !is.null(type.list[["Design"]])

|                                                                       
|                                                                 |   0%
|                                                                       
|...                                                              |   5%
ordinary text without R code

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|......                                                           |  10%

label: setup (with options) List of 1 $ include: logi FALSE

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|..........                                                       |  15%
ordinary text without R code

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|.............                                                    |  20%

label: unnamed-chunk-11

Command error:

processing file: reporter.Rmd

processing file: ./Hisat2.Rmd

processing file: ./lncRNA.Rmd

processing file: ./edger.Rmd Quitting from lines 9-57 (./edger.Rmd) Quitting from lines 250-255 (./edger.Rmd) Error in .rowNamesDF<-(x, value = value) : duplicate 'row.names' are not allowed Calls: run_reporter ... row.names<- -> row.names<-.data.frame -> .rowNamesDF<- In addition: Warning messages: 1: In eval(expr, envir, enclos) : NAs introduced by coercion 2: non-unique values when setting 'row.names':
Execution halted

Work dir: /home/skyhorse/Desktop/lncpipe/LncPipe/work/9a/da60f7a01eefad36c0f8ef5880ceb5

Tip: you can try to figure out what's wrong by changing to the process work dir executor > local (30) [98/4f5f6c] process > combine_public_annotation (1) [100%] 1 of 1 ✔ [8f/7c0b7e] process > Run_FastP (dPDLSCs1) [100%] 4 of 4 ✔ [e9/d0bd78] process > fastq_hisat2_alignmentFor... [100%] 4 of 4 ✔ [3e/b31271] process > StringTie_assembly (dPDLSCs1) [100%] 4 of 4 ✔ [af/d8fbc5] process > StringTie_merge_assembled_g... [100%] 1 of 1 ✔ [c7/2b8927] process > Merge_assembled_gtf_with_GE... [100%] 1 of 1 ✔ [42/35b7df] process > Identify_novel_lncRNAwith... [100%] 1 of 1 ✔ [70/f7a69a] process > Predict_coding_abilities_by... [100%] 1 of 1 ✔ [34/ce3f0b] process > Predict_coding_abilities_by... [100%] 1 of 1 ✔ [44/794ba5] process > Filter_lncRNA_by_coding_pot... [100%] 1 of 1 ✔ [6c/ed2818] process > Summary_renaming_and_classi... [100%] 1 of 1 ✔ [89/3136d0] process > Rerun_CPAT_to_evaluate_lncR... [100%] 1 of 1 ✔ [92/7e9c39] process > Rerun_CPAT_to_evaluate_codi... [100%] 1 of 1 ✔ [cb/109152] process > Secondary_basic_statistic (1) [100%] 1 of 1 ✔ [15/c3bacb] process > Build_kallisto_index_of_GTF... [100%] 1 of 1 ✔ [d6/465f86] process > Run_kallisto_for_quantifica... [100%] 4 of 4 ✔ [f6/9dd13d] process > Get_kallisto_matrix (Kallisto) [100%] 1 of 1 ✔ [9a/da60f7] process > Run_LncPipeReporter (Genera... [100%] 1 of 1, failed: 1 ✘ Error executing process > 'Run_LncPipeReporter (Generating report ...)'

Caused by: Process Run_LncPipeReporter (Generating report ...) terminated with an error exit status (1)

Command executed:

perl /home/skyhorse/Desktop/lncpipe/LncPipe/bin/modifyDesign.pl design.file > design.matrix Rscript -e "library(LncPipeReporter);run_reporter(input='.', output = 'reporter.html',output_dir='./LncPipeReports',de.method='edger',theme = 'npg',cdf.percent = 10,max.lncrna.len = 10000,min.expressed.sample = 50, ask = FALSE)"

Command exit status: 1

Command output: ordinary text without R code

|                                                                       
|..............................................................   |  95%

label: lncRNA table

|                                                                       
|.................................................................| 100%
ordinary text without R code

|                                                                       
|.............................................................    |  94%
ordinary text without R code

|                                                                       
|.................................................................| 100%

label: DE-child (with options) List of 2 $ child: language switch(de.method, edger = "edger.Rmd", deseq2 = "deseq2.Rmd", noiseq = "noiseq.Rmd") $ eval : language !is.null(type.list[["Design"]])

|                                                                       
|                                                                 |   0%
|                                                                       
|...                                                              |   5%
ordinary text without R code

|                                                                       
|......                                                           |  10%

label: setup (with options) List of 1 $ include: logi FALSE

|                                                                       
|..........                                                       |  15%
ordinary text without R code

|                                                                       
|.............                                                    |  20%

label: unnamed-chunk-11

Command error:

processing file: reporter.Rmd

processing file: ./Hisat2.Rmd

processing file: ./lncRNA.Rmd

processing file: ./edger.Rmd Quitting from lines 9-57 (./edger.Rmd) Quitting from lines 250-255 (./edger.Rmd) Error in .rowNamesDF<-(x, value = value) : duplicate 'row.names' are not allowed Calls: run_reporter ... row.names<- -> row.names<-.data.frame -> .rowNamesDF<- In addition: Warning messages: 1: In eval(expr, envir, enclos) : NAs introduced by coercion 2: non-unique values when setting 'row.names':
Execution halted

Work dir: /home/skyhorse/Desktop/lncpipe/LncPipe/work/9a/da60f7a01eefad36c0f8ef5880ceb5

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named .command.sh

[bioinformatist]

@likelet check if test dataset is too small to finish testing?

[likelet]

@bihuaf hi, thanks for point this issue out, I will check the test example ASAP.

[bihuaf]

Hi, is it possible to fix the problem? Thank you.

From: Qi ZHAO [mailto:notifications@github.com] Sent: Tuesday, July 14, 2020 3:26 AM To: likelet/LncPipe Cc: Feng, Bihua; Mention Subject: Re: [likelet/LncPipe] Error executing process > 'Run_LncPipeReporter (Generating report ...)'>duplicate 'row.names' are not allowed (#49)

@bihuafhttps://github.com/bihuaf hi, thanks for point this issue out, I will check the test example ASAP.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/likelet/LncPipe/issues/49#issuecomment-658017966, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AQIIXCT23ZW65EBKOCJ7RWDR3QCBXANCNFSM4OX24GSA.

[likelet]

@bihuaf sorry for the delayed reply. I have reproduced the error. and found it may be due to the last update of the test dataset a few months before.
The LncPipeReporter throws a duplicated rowname error during the differential expression analysis module in edgeR function, but the rownames were all unique in the current test case(the LncPipeReporter in docker image is not the latest version).
you can copy the folder /home/skyhorse/Desktop/lncpipe/LncPipe/work/9a/da60f7a01eefad36c0f8ef5880ceb5 out and rerun the lncPipeReporter with a local installed lncPipeReporter R package (latest version, developed by @bioinformatist ) by referring to this page. On the other hand, I will update the lncPipeReporter in the docker image soon. plz let this issue open until the docker image is fixed then.

[bihuaf]

I will try lncPipeReporter R package. Thank you very much.

From: Qi ZHAO [mailto:notifications@github.com] Sent: Monday, July 20, 2020 11:21 PM To: likelet/LncPipe Cc: Feng, Bihua; Mention Subject: Re: [likelet/LncPipe] Error executing process > 'Run_LncPipeReporter (Generating report ...)'>duplicate 'row.names' are not allowed (#49)

@bihuafhttps://github.com/bihuaf sorry for the delayed reply. I have reproduced the error. and found it may be due to the last update of the test dataset a few months before. The LncPipeReporter throws a duplicated rowname error during the differential expression analysis module in edgeR function, but the rownames were all unique in the current test case(the LncPipeReporter in docker image is not the latest version). you can copy the folder /home/skyhorse/Desktop/lncpipe/LncPipe/work/9a/da60f7a01eefad36c0f8ef5880ceb5 out and rerun the lncPipeReporter with a local installed lncPipeReporter R package (latest version, developed by @bioinformatisthttps://github.com/bioinformatist ) by referring to this pagehttps://github.com/bioinformatist/LncPipeReporter. On the other hand, I will update the lncPipeReporter in the docker image ASAP. plz let this issue open until the docker image is fixed then.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/likelet/LncPipe/issues/49#issuecomment-661605871, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AQIIXCUSZQ7VAKLDDNNNVPLR4UCRNANCNFSM4OX24GSA.

[bihuaf]

Hi, I copied the folder (a4a43f4f5e3d20b30a911ddbe1ba59), which includes dPDLSCs1_abundance.tsv , dPDLSCs2_abundance.tsv , final_all.gtf , get_kallisto_matrix.Rout , kallisto.count.txt , kallisto.tpm.txt , map.file , uPDLSCs1_abundance.tsv , uPDLSCs2_abundance.tsv . is it the right folder? After LncPipeReporter was installed, I tried using "a4a43f4f5e3d20b30a911ddbe1ba59" to replace "extdata" and deleted "demo_results", but it did not work. How to do it? Looking forward to your suggestion, thank you very much!

library(LncPipeReporter)

run_reporter(input = system.file(file.path("extdata", "demo_results"),package = "LncPipeReporter"), output = 'reporter.html', theme = 'npg', cdf.percent = 10, max.lncrna.len = 10000, min.expressed.sample = 50, ask = FALSE)

---

From: Qi ZHAO notifications@github.com Sent: Tuesday, July 21, 2020 12:20 AM To: likelet/LncPipe LncPipe@noreply.github.com Cc: Feng, Bihua bihuaf@bu.edu; Mention mention@noreply.github.com Subject: Re: [likelet/LncPipe] Error executing process > 'Run_LncPipeReporter (Generating report ...)'>duplicate 'row.names' are not allowed (#49)

@bihuafhttps://github.com/bihuaf sorry for the delayed reply. I have reproduced the error. and found it may be due to the last update of the test dataset a few months before. The LncPipeReporter throws a duplicated rowname error during the differential expression analysis module in edgeR function, but the rownames were all unique in the current test case(the LncPipeReporter in docker image is not the latest version). you can copy the folder /home/skyhorse/Desktop/lncpipe/LncPipe/work/9a/da60f7a01eefad36c0f8ef5880ceb5 out and rerun the lncPipeReporter with a local installed lncPipeReporter R package (latest version, developed by @bioinformatisthttps://github.com/bioinformatist ) by referring to this pagehttps://github.com/bioinformatist/LncPipeReporter. On the other hand, I will update the lncPipeReporter in the docker image ASAP. plz let this issue open until the docker image is fixed then.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/likelet/LncPipe/issues/49#issuecomment-661605871, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AQIIXCUSZQ7VAKLDDNNNVPLR4UCRNANCNFSM4OX24GSA.

[bioinformatist]

@bihuaf Can you bring us a tarball of your results, which might be used in LncPipeReporter? You can just upload it here as attachment, or send me an email: sunyu2@sysucc.org.cn

[bihuaf]

The results are attached. If you need more data please let me know. Thank you!

---

From: Yu Sun notifications@github.com Sent: Thursday, July 30, 2020 6:41 AM To: likelet/LncPipe LncPipe@noreply.github.com Cc: Feng, Bihua bihuaf@bu.edu; Mention mention@noreply.github.com Subject: Re: [likelet/LncPipe] Error executing process > 'Run_LncPipeReporter (Generating report ...)'>duplicate 'row.names' are not allowed (#49)

@bihuafhttps://github.com/bihuaf Can you bring us a tarball of your results, which might be used in LncPipeReporter? You can just upload it here as attachment, or send me an email: sunyu2@sysucc.org.cnmailto:sunyu2@sysucc.org.cn

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/likelet/LncPipe/issues/49#issuecomment-666263121, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AQIIXCXNI5FA5YRH2PIMEJLR6E525ANCNFSM4OX24GSA.

ID Type dPDLSCs1 dPDLSCs2 uPDLSCs1 uPDLSCs2 A4GALT protein_coding 23.00004 10 10 13 AC007326.1 protein_coding 0 0 0 0 ACO2 protein_coding 57.81148 41.3727 103.854 69.3334 ACR protein_coding 0 0 0 0 ADM2 protein_coding 4 1 38 5 ADORA2A protein_coding 1 0 1.812032 0 ADSL protein_coding 26.9999600930357 50 57.0000247693 53.00004441 AIFM3 protein_coding 0 0 0 0 AL008723.1 protein_coding 0 0 0 0 ALG12 protein_coding 27.60179 16.99998 51.63617 17.00003 ALG12-AS-1 known 0 0 4.36389 0 ANKRD54 protein_coding 13 18 26.681237 17 AP000349.2 protein_coding 0 1 0.787124 1 AP000350.10 protein_coding 1.5273 4.38357 0 0 AP000350.10-AS-1 known 0 0 1.08082 0 AP1B1 protein_coding 46.999950127001 44.9999 151.99995897 76.99995 AP1B1-AS-1 novel 0 0 0 0 APOBEC3A protein_coding 0 0 0 0 APOBEC3B protein_coding 2 6 7 9 APOBEC3B-AS-1 known 0 0 0 0 APOBEC3C protein_coding 27.99999 23.99999 61 34.00002 APOBEC3D protein_coding 1 0 4.070359 0 APOBEC3F protein_coding 3.34931 0 8.682944 0 APOBEC3G protein_coding 8 7 21.36998 4.00000082 APOBEC3H protein_coding 0 0 0 0 APOL1 protein_coding 30.929653 39.99999 98.13241 21.53957 APOL1-AS-1 known 6.07038 0 2.12367 4.46043 APOL2 protein_coding 65 53 75.99998 22.99995 APOL3 protein_coding 4.999998 8.0000094 19 1 APOL4 protein_coding 5.000005 0 0 0 APOL5 protein_coding 0 0 0 0 APOL6 protein_coding 19 15 132.634 35 APOL6-AS-1 novel 0 0 0 0 ARFGAP3 protein_coding 34.999969 46.00003 76.00002 36.99998207319 ARFGAP3-AS-1 known 1 0 0 0 ARHGAP8 protein_coding 0 0 1 0 ARSA protein_coding 38.99998 26.00004 113.0000188862 38.00003 ARVCF protein_coding 2 2.999995 11.9999996 2.000004 ASCC2 protein_coding 42.000014 25 84.99999 35.000004 ASPHD2 protein_coding 0 0 5.41246 2 ATF4 protein_coding 397.0001 342.99979 846.00004 250.00034 ATP5L2 protein_coding 0 0 0 0 ATP6V1E1 protein_coding 46.642837 42 103.21598 48.00004 ATXN10 protein_coding 55.00001 47.99998 113.00001 71.00001 ATXN10-AS-1 known 0 0 0 0 BAGE5 protein_coding 0 0 0 0 BAIAP2L2 protein_coding 1 2 2 3.000001 BAIAP2L2-AS-1 known 1 1 1 0 BCL2L13 protein_coding 65.00002523 47 145.999900326999 75.000109731601 BCR protein_coding 15.000002 31.000038 55.000035 35.0000224 BID protein_coding 36.473075945682 30.235079952 59.016182903 28 BID-AS-1 known 3.52702 3.76491 9.9838 0 BIK protein_coding 0 0 0 0 BPIFC protein_coding 0 0 0 0 BRD1 protein_coding 16 28.99998 82 30 C1QTNF6 protein_coding 31.999969 21.999955 29.00004 4 C1QTNF6-AS-1 known 0 0 0 0 C22orf15 protein_coding 0 0 1 1 C22orf23 protein_coding 1 0 3.85956 0 C22orf23-AS-1 known 6 3 10.1404 6 C22orf29 protein_coding 24 17.999995602 44.202575392 15.828962 C22orf31 protein_coding 0 0 0 0 C22orf39 protein_coding 16 14.00001566 37.57227 10.00382 C22orf42 protein_coding 0 1 1 0 C22orf46 protein_coding 18.99996 12 53.99996 16 CABIN1 protein_coding 34.000023301 38.99992120427 88.00006 53.000014114638 CABP7 protein_coding 0 0 0 0 CACNA1I protein_coding 0 0 0 0 CACNG2 protein_coding 0 0 0 0 CARD10 protein_coding 1 1.999998 4.000002 5.999996 CBX6 protein_coding 96 79 201.00025 102 CBX7 protein_coding 16 18.000048 42.00001 12.999954 CBY1 protein_coding 18.00005 16.83308 29.00000753211 11 CBY1-AS-1 known 0 0 0 0 CBY1-AS-2 known 2 2.16696 4 0 CCDC116 protein_coding 0 0 0 0 CCDC117 protein_coding 22.000032361 26.0000271 26.000033 21.999969402 CCDC134 protein_coding 0 0 4 6 CCDC157 protein_coding 1 2 9.807636 0 CCDC188 protein_coding 3.999999 1 8 1 CCT8L2 protein_coding 0 0 0 0 CDC42EP1 protein_coding 36 29 86 49 CDC45 protein_coding 8 7 12.0000003 18.999980386243 CDPF1 protein_coding 6.68534 9.000002 5 5.784684 CDPF1-AS-1 known 2.31467 0 4 1.21532 CECR1 protein_coding 1 0 1 1 CECR2 protein_coding 0 0 0 0 CECR5 protein_coding 25.999960472 17.00003 49.99997 20 CECR5-AS-1 known 0 0 0 1 CECR6 protein_coding 0 0 0 1 CELSR1 protein_coding 0 0 0 0 CENPM protein_coding 6.9999985354 11 9 15.00004 CERK protein_coding 52.99998 51 97.6894 75.99996 CHADL protein_coding 1 1 1 0 CHCHD10 protein_coding 11 5.000001 6 2.000003 CHEK2 protein_coding 11.5048800459966 16.79958 16.00001 7.999996 CHKB protein_coding 21.99999 20.99999 59.61354 12.4107343 CHKB-CPT1B protein_coding 0 0 3.99287 0.589258 CLDN5 protein_coding 0 0 0 0 CLTCL1 protein_coding 15 6.999999 17.000001 2 COMT protein_coding 101.86191 110.00001 264.00036 85 CPT1B protein_coding 2 1.9999997 9.3935180481243 3 CRELD2 protein_coding 44.39824 25.99998 82.99995 42.0000693343 CRKL protein_coding 49 42 126.2278 73 CRKL-AS-1 novel 0 0 13.772 0 CRYBA4 protein_coding 0 0 0 0 CRYBB1 protein_coding 0 0 0 0 CRYBB2 protein_coding 0 2 2 1 CRYBB3 protein_coding 0 0 0 0 CSDC2 protein_coding 1 0 5.07719 1 CSDC2-AS-1 known 0 0 0 0 CSF2RB protein_coding 0 0 0 0 CSNK1E protein_coding 103.000035982 105.16213 298.0004294504 140.15643 CSNK1E-AS-1 known 0 0.837795 0 0.843598 CSNK1E-AS-2 known 0 0 0 0 CU104787.1 protein_coding 0 0 0 0 CYB5R3 protein_coding 542.00039 582.00018 688.9996022 436.9996 CYP2D6 protein_coding 0 0 2 0 CYP2D6-AS-1 known 2 1 2 0 CYP2D7 protein_coding 0 0 3 0 CYTH4 protein_coding 0 0 0 0 CYTH4-AS-1 known 0 0 0 0 DDT protein_coding 23.99996 19.7632 36.52645 14 DDTL protein_coding 0 1.23681 2.47355 0 DDX17 protein_coding 356.00038 296.9995 1187.00046 211.0003 DENND6B protein_coding 3 4 24 0 DENND6B-AS-1 known 0 0 0 0 DENND6B-AS-2 known 0 0 0 0 DEPDC5 protein_coding 8.000001003086 6.9999928637536 19.00002307 10.999999 DERL3 protein_coding 1 0 0 1 DESI1 protein_coding 21.99998 21.999990991 64.88515 18.839916 DESI1-AS-1 known 0 0 0 6.16007 DGCR14 protein_coding 12.99999 15.99998 27.99999 20.99995 DGCR2 protein_coding 65.000088 55.999946 141.9998016179 54 DGCR2-AS-1 known 0 0 0 0 DGCR2-AS-2 known 0 0 0 0 DGCR6 protein_coding 0 0 2.01491 0 DGCR6L protein_coding 74 81 53.9851 41 DGCR8 protein_coding 24.999997 25.99998763762 53.999980648749 31.000011 DMC1 protein_coding 3 2 7.000002 3.99999 DNAJB7 protein_coding 0 0 2 0 DNAL4 protein_coding 16.99996 8 29.00004 9.000002 DRG1 protein_coding 47.99999 47 61.99996 33 DRICH1 protein_coding 0 0 0 0 DUSP18 protein_coding 5.999999 6.0065475 13.85438 7.99999 EFCAB6 protein_coding 0 0 5.999996 1 EFCAB6-AS-1 known 0 0 0 0 EIF3D protein_coding 114.00002652 98.99993139293 187.00004 112.000002 EIF3L protein_coding 186.999873106 171 292.580190661899 130 EIF4ENIF1 protein_coding 10 10.999998 37.999979 11 EIF4ENIF1-AS-1 known 0 0 0 0 EIF4ENIF1-AS-2 known 2 0 5 0 ELFN2 protein_coding 0 0 0 0 ELFN2-AS-1 known 0 0 0 0 EMID1 protein_coding 9 10 4 1 EMID1-AS-1 known 0 0 0 0 ENTHD1 protein_coding 0 0 0 0 EP300 protein_coding 52.999998 44.9999597 193.9998 85 EP300-AS-1 known 0 0 4.97854 1 EP300-AS-2 known 0 0 0 0 EWSR1 protein_coding 90.999997 102.00007 357.99965 222.999570215911 FAM109B protein_coding 56.00005 50.00003 37 13 FAM118A protein_coding 22.999991 16.99996 35.999968 12 FAM19A5 protein_coding 1 1.999999 4 2.999998 FAM227A protein_coding 2 0 2.46532 0 FAM227A-AS-1 novel 0 0 0 0 FAM83F protein_coding 0 0 1.22126 0 FAM83F-AS-1 known 0 0 0 0 FBLN1 protein_coding 8112.0006475407 5565.00036 1192.00097 257 FBXO7 protein_coding 38.99994618 55.00005 108 48.00001 FOXRED2 protein_coding 14.0000445388 17.0000018 38.00001 27.00004 FP325331.1 protein_coding 0 0 0 0 GAB4 protein_coding 0 0 0 0 GAL3ST1 protein_coding 0 0 0 0 GALR3 protein_coding 0 0 0 0 GAS2L1 protein_coding 48.99995 47.999992 67.000033 79.00000923 GATSL3 protein_coding 7 6 14.99999 2 GCAT protein_coding 12 10 22.00002 5 GGA1 protein_coding 26.0000432091 19.00000319 67.000009 35.000034 GGT1 protein_coding 2 1 5.999999 2 GGT2 protein_coding 0 0 0 0 GGT2-AS-1 known 0 0 0 0 GGT5 protein_coding 26.0000108 15.999983 4 0 GGTLC2 protein_coding 0 0 0 0 GGTLC3 protein_coding 0 0 0 0 GNAZ protein_coding 1.999996 1 2 6.9999971 GNB1L protein_coding 9 10.9999912255 15.797467 12.17106 GP1BB protein_coding 1.25329 0.955695 5.38748 6.05334 GRAMD4 protein_coding 12.999993757 4 15.000001 5 GRAP2 protein_coding 0 0 0 0 GRK3 protein_coding 0 0 2 3 GRK3-AS-1 known 0 0 0 0 GSC2 protein_coding 0 0 0 0 GSTT2 protein_coding 2 0 0 0 GSTT2B protein_coding 0 1 1 0 GTPBP1 protein_coding 28.423189 26.197611 98.67317 50.18527 GTSE1 protein_coding 16 29 43.00001 72.99997 GUCD1 protein_coding 76.0000365306259 83.32063 135.11049494317 66.7950641 GUCD1-AS-1 known 0 0 0 0 H1F0 protein_coding 238 215 264 229 HDAC10 protein_coding 19 12.20654234 25.3529354800729 15.6930657 HIC2 protein_coding 4 3.99999946049 15.14458 6.64226 HIC2-AS-1 known 3 0 0 1.79735 HIRA protein_coding 27 35 47.427800016942 30.99616 HMGXB4 protein_coding 20.99998 20.999976027 45.9999633543 34.9999615647628 HMOX1 protein_coding 50 25 73 45.00002 HORMAD2 protein_coding 0 0 0 0 HORMAD2-AS-1 known 0 0 0 0 HORMAD2-AS-2 known 0 2.02176 7.09484 1.05167 HPS4 protein_coding 13.00000666 21.00003910815 44.58756 17.99995739 HSCB protein_coding 12.49511 7.200409 12 7 IFT27 protein_coding 11.000007 8.000001709 31.99995 10 IGLL1 protein_coding 0 0 0 0 IGLL1-AS-1 known 0 0 0 0 IGLL5 protein_coding 0 0 0 0 IGLL5-AS-1 known 0 0 0 0 IGLL5-AS-2 known 0 0 0 0 IL17RA protein_coding 30.99996035 31.0000409027 79.70249 42 IL17RA-AS-1 novel 0 0 0.2975 0 IL17RA-AS-2 known 0 0 0 0 IL17REL protein_coding 0 0 0 0 IL2RB protein_coding 1 1 0 0 INPP5J protein_coding 0 0 0 0 ISX protein_coding 0 0 0 0 JOSD1 protein_coding 53.000026 47.999999 106.296 42.000023 KCNJ4 protein_coding 0 0 0 0 KCNJ4-AS-1 known 0 0 0 0 KCTD17 protein_coding 29.000009 22.99997 48.000049 23.0000113 KDELR3 protein_coding 116 111 119.00004 58.99992 KIAA0930 protein_coding 52.000036 38.00002 82.9999667557 36.00004 KIAA1644 protein_coding 26 14 32 16 KIAA1671 protein_coding 2 0 10.00000125408 4.00000017964 KIAA1671-AS-1 known 0 0 0 0 KIAA1671-AS-2 known 0 0 1.16776 0 KLHDC7B protein_coding 0 0 1 0 KLHL22 protein_coding 16.00001 18.00002 37.99998 14.00001 KREMEN1 protein_coding 96.6861 75 81.00001 9 L3MBTL2 protein_coding 18.999946387492 12.99994912099 29.48188 28.00001 L3MBTL2-AS-1 known 0 0 1.51815 2 LARGE1 protein_coding 8.9999943 5.000005 21.999979 27.999982 LARGE1-AS-1 known 0 0 0 0 LARGE1-AS-2 known 0 0 0 0 LDOC1L protein_coding 42 30 90 55 LGALS1 protein_coding 23679.97591 30870.04812 12502.95416 14430.0148 LGALS2 protein_coding 0 0 1 1 LIF protein_coding 2.000001 2 486.9259 337 LIF-AS-1 known 0 0 5.07451 6 LIF-AS-2 known 0 0 0 0 LIMK2 protein_coding 10.00001 14.999992 25.00000632 10 LINC-AC007326.1-1 known 0 0 0 0 LINC-AC007326.1-2 known 0 0 0 0 LINC-ACR-1 known 0 0 0 0 LINC-ACR-2 known 0 0 0 0 LINC-ACR-3 known 0 0 0 0 LINC-AIFM3-1 known 0 0 1 0 LINC-AP1B1-1 known 0 0 0 0 LINC-APOBEC3A-1 known 0 0 0 0 LINC-APOBEC3G-1 known 0 0 0 0 LINC-APOL3-1 known 0 0 0 0 LINC-APOL3-2 known 0 0 0 0 LINC-APOL3-3 known 0 0 0 0 LINC-APOL3-4 known 0 0 0 0 LINC-APOL3-5 known 0 0 0 0 LINC-APOL3-6 known 0 0 0 0 LINC-APOL4-1 known 0 0 0 0 LINC-APOL5-1 known 0 0 0 0 LINC-APOL6-1 known 0 0 0 0 LINC-ARFGAP3-1 known 0 0 0 0 LINC-ARFGAP3-2 known 0 0 0 0 LINC-ARFGAP3-3 known 2 1 1 1 LINC-ARFGAP3-4 known 0 0 0 0 LINC-ASPHD2-1 known 0 0 0 0 LINC-ATXN10-1 known 0 0 0 0 LINC-ATXN10-2 known 0 0 0 0 LINC-ATXN10-3 known 0 0 0 0 LINC-BAGE5-1 known 0 0 0 0 LINC-BAGE5-2 known 0 0 0 0 LINC-BAGE5-3 known 0 0 0 0 LINC-BCR-1 known 0 0 0 0 LINC-BCR-2 known 0 0 0 0 LINC-BCR-3 known 0 0 0 0 LINC-BCR-4 known 0 0 5 0 LINC-BCR-5 known 0 0 0 0 LINC-BCR-6 known 0 0 0 0 LINC-BID-1 known 0 0 0 0 LINC-BRD1-1 known 0 0 0 0 LINC-BRD1-10 known 0 0 0 0 LINC-BRD1-11 known 0 0 0 0 LINC-BRD1-12 known 0 0 0 0 LINC-BRD1-13 known 0 0 0 0 LINC-BRD1-14 known 0 0 0 0 LINC-BRD1-2 known 0 0 0 0 LINC-BRD1-3 known 0 0 0 0 LINC-BRD1-4 known 0 0 0 0 LINC-BRD1-5 known 0 0 0 0 LINC-BRD1-6 known 0 0 0 0 LINC-BRD1-7 known 0 0 0 0 LINC-BRD1-8 known 0 0 0 0 LINC-BRD1-9 known 0 0 0 0 LINC-C22orf42-1 known 0 0 0 0 LINC-C22orf42-2 known 0 0 0 0 LINC-C22orf42-3 known 0 0 0 0 LINC-CABIN1-1 known 0 0 0 0 LINC-CABIN1-2 known 0 0 0 0 LINC-CABP7-1 known 0 0 0 0 LINC-CACNG2-1 known 0 0 0 0 LINC-CACNG2-2 known 0 0 0 0 LINC-CBX7-1 known 0 0 0 0 LINC-CBX7-2 known 0 0 0 0 LINC-CBX7-3 known 0 0 0 0 LINC-CCDC188-1 known 3 2 7 3 LINC-CCT8L2-1 known 0 0 0 0 LINC-CCT8L2-10 known 0 0 0 0 LINC-CCT8L2-11 known 0 0 0 0 LINC-CCT8L2-12 known 0 0 0 0 LINC-CCT8L2-13 known 0 0 0 0 LINC-CCT8L2-14 known 0 0 0 0 LINC-CCT8L2-15 known 0 0 0 0 LINC-CCT8L2-16 known 0 0 0 0 LINC-CCT8L2-2 known 0 0 0 0 LINC-CCT8L2-3 known 0 0 0 0 LINC-CCT8L2-4 known 2 0 3.000003 0 LINC-CCT8L2-5 known 0 0 0 0 LINC-CCT8L2-6 known 0 0 0 0 LINC-CCT8L2-7 known 0 0 0 0 LINC-CCT8L2-8 known 0 0 0 0 LINC-CCT8L2-9 known 0 0 0 0 LINC-CDC42EP1-1 known 0 0 0 0 LINC-CECR1-1 known 0 0 0 0 LINC-CECR1-2 known 0 0 0 0 LINC-CECR1-3 known 0 0 0 0 LINC-CECR1-4 known 0 0 0 0 LINC-CECR2-1 known 0 0 0 0 LINC-CECR2-2 known 0 0 0 0 LINC-CECR2-3 known 0 0 0 0 LINC-CECR2-4 known 0 0 2 0 LINC-CECR5-1 known 0 0 1 0 LINC-CECR6-1 known 0 0 0 0 LINC-CELSR1-1 known 0 0 0 0 LINC-CENPM-1 known 0 0 0 0 LINC-CLTCL1-1 novel 0 0 0 0 LINC-CPT1B-1 known 0 0 0 0 LINC-CPT1B-2 known 0 0 0 0 LINC-CRELD2-1 known 0 0 0 0 LINC-CRKL-1 known 0 0 0 0 LINC-CRYBA4-1 known 0 1 0 0 LINC-CRYBA4-10 known 0 0 0 0 LINC-CRYBA4-11 known 0 0 0 0 LINC-CRYBA4-12 known 0 0 0 0 LINC-CRYBA4-13 known 0 0 0 0 LINC-CRYBA4-2 known 1 0 1.9999997 1 LINC-CRYBA4-3 known 0 0 0 0 LINC-CRYBA4-4 known 0 0 1 0 LINC-CRYBA4-5 known 0 0 1 0 LINC-CRYBA4-6 known 0 0 0 0 LINC-CRYBA4-7 known 0 0 0 0 LINC-CRYBA4-8 known 0 0 0 0 LINC-CRYBA4-9 known 0 0 0 0 LINC-CRYBB2-1 known 0 0 0 0 LINC-CRYBB2-2 known 0 0 1 0 LINC-CRYBB2-3 known 0 0 0 0 LINC-CRYBB3-1 known 0 0 0 0 LINC-CSF2RB-1 known 0 0 0 0 LINC-CSNK1E-1 novel 0 0 0 0 LINC-CU104787.1-1 known 0 0 0 0 LINC-CU104787.1-2 known 0 0 0 0 LINC-CYP2D6-1 known 0 0 0 1 LINC-CYP2D6-2 known 0 0 0 0 LINC-CYTH4-1 known 0 0 0 0 LINC-DDT-1 known 0 0 0 0 LINC-DDTL-1 known 0 0 0 0 LINC-DGCR14-1 known 0 0 0 0 LINC-DGCR2-1 known 0 0 0 0 LINC-DGCR2-2 known 0 0 0 0 LINC-DGCR2-3 known 0 0 0 0 LINC-DGCR2-4 known 0 0 0 0 LINC-DGCR2-5 known 0 0 0 0 LINC-DGCR2-6 known 0 0 0 0 LINC-DGCR2-7 known 0 0 0 0 LINC-DGCR2-8 known 0 0 0 0 LINC-DGCR6-1 known 0 0 0 0 LINC-DGCR6-2 known 0 0 0 0 LINC-DGCR6-3 known 0 0 0 0 LINC-DGCR6-4 known 0 0 1.775671 0 LINC-DGCR6-5 known 0 0 0 0 LINC-DGCR6-6 known 0 0 0 0 LINC-DGCR6-7 known 0 0 0 0 LINC-DGCR6-8 known 0 0 0 0 LINC-DGCR6-9 known 0 0 0 0 LINC-DGCR6L-1 known 0 0 3 0 LINC-DGCR6L-2 known 0 0 0 0 LINC-DMC1-1 known 0 0 0 0 LINC-DRG1-1 known 0 0 0 0 LINC-DRICH1-1 known 0 0 0 0 LINC-DRICH1-2 known 0 0 0 0 LINC-EFCAB6-1 known 0 0 0 0 LINC-EIF3D-1 known 0 0 0 0 LINC-ELFN2-1 known 0 0 0 0 LINC-EMID1-1 known 0 0 0 0 LINC-EP300-1 known 0 0 0 0 LINC-EP300-2 known 0 0 0 0 LINC-EP300-3 known 0 0 0 0 LINC-EP300-4 known 0 0 0 0 LINC-EP300-5 known 0 0 0 0 LINC-FAM19A5-1 known 0 0 0 0 LINC-FAM19A5-10 known 0 0 0 0 LINC-FAM19A5-11 known 0 0 0 0 LINC-FAM19A5-12 known 0 0 0 0 LINC-FAM19A5-13 known 0 0 1.00692 0 LINC-FAM19A5-14 known 0 0 0 0 LINC-FAM19A5-15 known 0 0 0 0 LINC-FAM19A5-16 known 0 0 0 0 LINC-FAM19A5-17 known 0 0 0 0 LINC-FAM19A5-18 known 0 0 0 0 LINC-FAM19A5-19 known 0 0 0 0 LINC-FAM19A5-2 known 0 0 0 0 LINC-FAM19A5-20 known 0 0 0 0 LINC-FAM19A5-21 known 0 0 0 0 LINC-FAM19A5-22 known 0 0 0 0 LINC-FAM19A5-23 known 0 0 0 0 LINC-FAM19A5-24 known 4 1 0 0 LINC-FAM19A5-25 known 0 0 0 0 LINC-FAM19A5-3 known 0 0 0 0 LINC-FAM19A5-4 known 0 0 0 0 LINC-FAM19A5-5 known 0 0 0 0 LINC-FAM19A5-6 known 0 0 1 0 LINC-FAM19A5-7 known 0 0 0 0 LINC-FAM19A5-8 known 0 0 0 0 LINC-FAM19A5-9 known 0 0 0 0 LINC-FAM227A-1 known 0 0 0 0 LINC-FBLN1-1 known 2.000003 0 1 0 LINC-FBLN1-2 known 0 0 0 0 LINC-FBXO7-1 known 0 1 0 0 LINC-GAB4-1 known 0 0 0 0 LINC-GAB4-2 known 0 0 0 0 LINC-GAB4-3 known 0 0 0 0 LINC-GAB4-4 known 0 0 0 0 LINC-GAB4-5 known 0 0 0 0 LINC-GAB4-6 known 0 0 0 0 LINC-GAB4-7 known 0 0 0 0 LINC-GAB4-8 known 0 0 0 0 LINC-GATSL3-1 known 0 0 1 0 LINC-GGA1-1 known 0 0 0 0 LINC-GGT1-1 known 0 0 1 1 LINC-GGT1-2 known 0 0 0 0 LINC-GGT2-1 known 0 0 0 0 LINC-GGT2-2 known 0 0 0 0 LINC-GGT2-3 known 0 0 0 0 LINC-GGT2-4 known 0 0 0 0 LINC-GGT2-5 known 0 0 0 0 LINC-GGT2-6 known 0 0 0 0 LINC-GGT5-1 known 0 0 0 0 LINC-GGTLC2-1 known 0 0 0 0 LINC-GGTLC2-10 known 0 0 0 0 LINC-GGTLC2-11 known 0 0 0 0 LINC-GGTLC2-12 known 0 0 0 0 LINC-GGTLC2-13 known 0 0 0 0 LINC-GGTLC2-14 known 0 0 0 0 LINC-GGTLC2-15 known 0 0 0 0 LINC-GGTLC2-16 known 0 0 0 0 LINC-GGTLC2-17 known 0 0 0 0 LINC-GGTLC2-18 known 0 0 0 0 LINC-GGTLC2-19 known 0 0 0 0 LINC-GGTLC2-2 known 0 0 0 0 LINC-GGTLC2-3 known 0 0 0 0 LINC-GGTLC2-4 known 0 0 0 0 LINC-GGTLC2-5 known 0 0 0 0 LINC-GGTLC2-6 known 0 0 0 0 LINC-GGTLC2-7 known 0 0 0 0 LINC-GGTLC2-8 known 0 0 0 0 LINC-GGTLC2-9 known 0 0 0 0 LINC-GGTLC3-1 known 0 0 0 0 LINC-GGTLC3-2 known 0 0 0 0 LINC-GGTLC3-3 known 0 0 0 0 LINC-GGTLC3-4 known 0 0 0 0 LINC-GGTLC3-5 known 0 0 0 0 LINC-GGTLC3-6 known 0 0 0 0 LINC-GNB1L-1 known 0 0 0 0 LINC-GRK3-1 known 0 0 0 0 LINC-GRK3-2 known 0 0 0 0 LINC-GSTT2B-1 known 0 0 1 0 LINC-GSTT2B-2 known 0 0 0 0 LINC-GSTT2B-3 known 0 0 0 0 LINC-GSTT2B-4 known 0 0 0 0 LINC-GSTT2B-5 known 1 0 0 0 LINC-GTSE1-1 known 0 0 1 0 LINC-HMGXB4-1 known 0 0 0 0 LINC-HMGXB4-2 known 0 0 0 0 LINC-HMGXB4-3 known 0 0 0 0 LINC-HMGXB4-4 known 0 0 0 0 LINC-HMGXB4-5 known 2.01357 0 2.19305 1 LINC-HMOX1-1 known 0.00785486 0 0 0 LINC-HMOX1-2 known 0 0 0 0 LINC-HORMAD2-1 known 0 0 0 0 LINC-IGLL1-1 known 0 0 0 0 LINC-IGLL1-2 known 0 0 0 0 LINC-IGLL1-3 known 0 0 0 0 LINC-IGLL1-4 known 0 0 0 0 LINC-IGLL1-5 known 0 0 0 0 LINC-IGLL1-6 known 0 0 0 0 LINC-IGLL5-1 known 0 0 0 0 LINC-IGLL5-10 known 0 0 0 0 LINC-IGLL5-11 known 0 0 0 0 LINC-IGLL5-12 known 0 0 0 0 LINC-IGLL5-13 known 0 0 0 0 LINC-IGLL5-14 known 0 0 0 0 LINC-IGLL5-15 known 0 0 0 0 LINC-IGLL5-16 known 0 0 0 0 LINC-IGLL5-17 known 0 0 0 0 LINC-IGLL5-18 known 0 0 0 0 LINC-IGLL5-19 known 0 0 0 0 LINC-IGLL5-2 known 0 0 0 0 LINC-IGLL5-3 known 0 0 0 0 LINC-IGLL5-4 known 0 0 0 0 LINC-IGLL5-5 known 0 0 0 0 LINC-IGLL5-6 known 0 0 0 0 LINC-IGLL5-7 known 0 0 0 0 LINC-IGLL5-8 known 0 0 0 0 LINC-IGLL5-9 known 0 0 0 0 LINC-IL17RA-1 known 0 0 0 0 LINC-IL17RA-2 known 0 0 0 0 LINC-IL17RA-3 known 3 1 6 0 LINC-ISX-1 known 0 0 0 0 LINC-ISX-10 known 0 0 0 0 LINC-ISX-2 known 0 0 0 0 LINC-ISX-3 known 0 0 0 0 LINC-ISX-4 known 0 0 0 0 LINC-ISX-5 known 0 0 0 0 LINC-ISX-6 known 0 0 0 0 LINC-ISX-7 known 0 0 1 1 LINC-ISX-8 known 0 0 0 0 LINC-ISX-9 known 0 0 0 0 LINC-JOSD1-1 known 1 0 0 0 LINC-KCNJ4-1 known 0 0 0 0 LINC-KIAA1644-1 known 0 0 0 0 LINC-KIAA1644-2 known 0 0 0 0 LINC-KIAA1644-3 known 1 0 0 0 LINC-KLHDC7B-1 known 0 0 0 0 LINC-KLHDC7B-2 known 0 0 0 0 LINC-KLHDC7B-3 known 0 0 0 0 LINC-KREMEN1-1 known 0 0 0 0 LINC-KREMEN1-2 novel 0 0 0 0 LINC-L3MBTL2-1 known 0 1 1.01858 0 LINC-LARGE1-1 known 0 0 0 0 LINC-LARGE1-2 known 0 0 0 0 LINC-LARGE1-3 known 0 0 0 0 LINC-LARGE1-4 known 0 0 0 0 LINC-LARGE1-5 known 0 0 0 0 LINC-LARGE1-6 known 0 0 0 0 LINC-LARGE1-7 known 0 0 0 0 LINC-LDOC1L-1 known 0 1 0 0 LINC-LDOC1L-10 known 0 0 0 0 LINC-LDOC1L-11 known 0 0 0 0 LINC-LDOC1L-12 known 0 0 0 0 LINC-LDOC1L-2 known 0 0 0 0 LINC-LDOC1L-3 known 0 0 0 0 LINC-LDOC1L-4 known 0 0 0 0 LINC-LDOC1L-5 known 0 0 0 0 LINC-LDOC1L-6 known 0 0 0 0 LINC-LDOC1L-7 known 0 0 0 0 LINC-LDOC1L-8 known 0 0 0 0 LINC-LDOC1L-9 known 0 0 0 0 LINC-LRP5L-1 known 2 1 4 1 LINC-LRP5L-2 known 0 0 0 0 LINC-LRP5L-3 known 0 0 0 0 LINC-LRP5L-4 known 0 0 0 0 LINC-LRP5L-5 known 0 0 0 0 LINC-LRP5L-6 known 0 0 0 0 LINC-LRP5L-7 known 0 0 0 0 LINC-LRP5L-8 known 20 11 29 17 LINC-LRP5L-9 known 0 0 0 0 LINC-LRRC74B-1 known 0 0 0 0 LINC-LRRC74B-2 known 0 0 0 0 LINC-LRRC74B-3 known 0 0 0 0 LINC-LRRC74B-4 known 1 0 0 1 LINC-LRRC74B-5 known 0 0 0 0 LINC-MAPK1-1 known 0 0 0 0 LINC-MAPK1-2 known 0 0 0 0 LINC-MCHR1-1 known 0 0 0 0 LINC-MCHR1-2 known 0 0 0 0 LINC-MCM5-1 known 0 0 0 0 LINC-MED15-1 known 0 0 0 0 LINC-MED15-2 known 0 0 0 0 LINC-MED15-3 known 0 0 0 0 LINC-MFNG-1 known 0 0 0 0.952793 LINC-MICAL3-1 known 0 0 0 0 LINC-MN1-1 known 0 0 0 0 LINC-MN1-10 known 0 0 0 0 LINC-MN1-11 known 0 0 0 0 LINC-MN1-12 known 0 0 0 0 LINC-MN1-13 known 0 0 0 0 LINC-MN1-14 known 0 0 0 0 LINC-MN1-15 known 0 0 0 0 LINC-MN1-16 known 0 0 0 0 LINC-MN1-17 known 1 0 0 0 LINC-MN1-2 known 0 0 0 0 LINC-MN1-3 known 0 0 0 0 LINC-MN1-4 known 0 0 0 0 LINC-MN1-5 known 0 0 0 0 LINC-MN1-6 known 0 0 0 0 LINC-MN1-7 known 0 0 0 0 LINC-MN1-8 known 0 0 0 0 LINC-MN1-9 known 0 0 0 0 LINC-MORC2-1 known 89.000016 66.0000500618296 242.226840012893 75.28946 LINC-MORC2-2 known 0 0 0 0 LINC-MORC2-3 known 0 0 1.7731 2.70911 LINC-MORC2-4 known 0 0 0 0.00138574 LINC-MPPED1-1 known 0 0 0 0 LINC-MPPED1-2 known 0 0 0 0 LINC-MTFP1-1 known 0 0 0 0 LINC-MYH9-1 known 0 0 0 0 LINC-MYH9-2 known 0 0 0 0 LINC-MYH9-3 known 0 0 0 0 LINC-MYO18B-1 known 0 0 0 0 LINC-MYO18B-2 known 0 0 0 0 LINC-NCF4-1 known 0 0 0 0 LINC-NDUFA6-1 known 0 0 0 0 LINC-NFAM1-1 known 0 0 0 0 LINC-NFAM1-2 known 0 0 0 0 LINC-NFAM1-3 known 0 0 0 0 LINC-NFAM1-4 known 2 2 0 0 LINC-NFAM1-5 known 0 0 0 0 LINC-NUP50-1 known 8 8 7 2 LINC-NUP50-2 known 0 0 0 0 LINC-NUP50-3 known 0.986432 0 0 0 LINC-NUP50-4 known 0 0 0 0 LINC-OR11H1-1 known 0 0 0 0 LINC-OR11H1-10 known 0 0 0 0 LINC-OR11H1-11 known 0 0 0 0 LINC-OR11H1-12 known 0 0 0 0 LINC-OR11H1-13 known 0 0 0 0 LINC-OR11H1-14 known 0 0 1 0 LINC-OR11H1-15 known 0 0 0 0 LINC-OR11H1-2 known 0 0 0 0 LINC-OR11H1-3 known 0 0 0 0 LINC-OR11H1-4 known 0 0 0 0 LINC-OR11H1-5 known 0 0 0 0 LINC-OR11H1-6 known 0 0 0 0 LINC-OR11H1-7 known 0 0 0 0 LINC-OR11H1-8 known 0 0 0 0 LINC-OR11H1-9 known 0 0 0 0 LINC-PATZ1-1 known 2 2 0 0 LINC-PDGFB-1 known 0 0 0 0 LINC-PDGFB-2 known 0 0 0 0 LINC-PDXP-1 known 0 0 0 0 LINC-PEX26-1 known 0 0 0 0 LINC-PI4KA-1 known 0 0 1 0 LINC-PI4KA-2 known 0 0 0 0 LINC-PI4KA-3 known 0 0 0 0 LINC-PI4KA-4 known 0 0 0 0 LINC-PI4KA-5 known 0 0 0 0 LINC-PIK3IP1-1 known 0 0 0 0 LINC-PITPNB-1 known 0 0 0 0 LINC-PITPNB-2 known 0 0 0 0 LINC-PIWIL3-1 known 0 0 0 0 LINC-PIWIL3-2 known 0 0 0 0 LINC-PIWIL3-3 known 0 0 0 0 LINC-PIWIL3-4 known 0 1 2 1 LINC-PIWIL3-5 known 1 0 0 0 LINC-POLDIP3-1 known 0 0 0 0 LINC-POTEH-1 known 0 0 0 0 LINC-POTEH-10 known 0 0 0 0 LINC-POTEH-11 known 1 0 0 1 LINC-POTEH-12 known 0 0 0 0 LINC-POTEH-13 known 0 0 0 0 LINC-POTEH-14 known 0 0 0 0 LINC-POTEH-2 known 0 0 0 0 LINC-POTEH-3 known 0 0 0 0 LINC-POTEH-4 known 0 0 0 0 LINC-POTEH-5 known 0 0 0 0 LINC-POTEH-6 known 1 3 8 2 LINC-POTEH-7 known 0 0 0 0 LINC-POTEH-8 known 0 0 0 0 LINC-POTEH-9 known 0 0 0 0 LINC-PPARA-1 known 0 0 0 0 LINC-PPARA-2 known 0 0 0 0 LINC-PPIL2-1 known 3 0 0 0 LINC-PPM1F-1 known 0 0 0 0 LINC-PRAME-1 known 0 0 0 0 LINC-PRAME-2 known 0 0 0 0 LINC-PRR34-1 known 0 0 0 0 LINC-PRR34-2 novel 0 0 3.89956 0 LINC-PRR34-3 known 0 1 3.10045 0 LINC-PRR34-4 known 0 0 0 0 LINC-PRR34-5 known 0 0 0 0 LINC-PRR34-6 known 3 0 1 1 LINC-PRR5-1 known 0 0 0 0 LINC-PRR5-2 known 0 0 0 0 LINC-PRR5-3 known 0 0 1 0 LINC-PRR5-4 known 0 0 0 0 LINC-RAC2-1 known 0 0 0 0 LINC-RASD2-1 known 0 0 0 0 LINC-RASD2-2 known 0 0 0 0 LINC-RBFOX2-1 known 1.06971 0 0 0 LINC-RBFOX2-2 known 0 0 0 0 LINC-RBFOX2-3 known 3 0 3.45999 1 LINC-RBX1-1 known 0 0 0 0 LINC-RBX1-2 known 0 0 0 0 LINC-RFPL1-1 known 0 0 0 0 LINC-RFPL1-2 known 0 0 0 0 LINC-RFPL3-1 known 0 0 0 0 LINC-RGL4-1 known 0 0 0 0 LINC-RGL4-2 known 0 0 0 0 LINC-RIBC2-1 known 0 0 0 0 LINC-RIMBP3-1 known 0 0 0 0 LINC-RIMBP3-2 known 0 0 0 0 LINC-RIMBP3-3 known 0 0 0 0 LINC-RIMBP3-4 known 0 0 0 0 LINC-RIMBP3-5 known 0 0 0 0 LINC-RIMBP3-6 known 0 0 0 0 LINC-RIMBP3-7 known 0 0 0 0 LINC-RIMBP3-8 known 0 0 0 0 LINC-RIMBP3B-1 known 0 0 0 0 LINC-RIMBP3B-2 known 0 0 0 0 LINC-RIMBP3B-3 known 0 0 0 0 LINC-RIMBP3B-4 known 0 0 0 0 LINC-RIMBP3B-5 known 0 0 0 0 LINC-RIMBP3B-6 known 0 0 0 0 LINC-RIMBP3B-7 known 0 0 0 0 LINC-RIMBP3B-8 known 0 0 0 0 LINC-RIMBP3B-9 known 0 0 0 0 LINC-RIMBP3C-1 known 0 0 0 0 LINC-RNF185-1 known 0 0 0 0 LINC-RNF185-2 known 0 0 0 0 LINC-RPL3-1 known 0 0 0 0 LINC-RPL3-2 known 0 0 0 0 LINC-RPL3-3 known 0 0 0 0 LINC-RSPH14-1 known 0 0 0 0 LINC-RSPH14-2 known 0 0 0 0 LINC-RSPH14-3 known 0 0 0 0 LINC-RTCB-1 known 0 0 0 0 LINC-RTN4R-1 known 0 0 0 0 LINC-RTN4R-2 known 0 0 0 0 LINC-RTN4R-3 known 0 0 0 0 LINC-SCARF2-1 known 0 0 0 0 LINC-SCARF2-2 known 0 0 0 0 LINC-SDF2L1-1 known 0 0 0 0 LINC-SDF2L1-2 known 0 0 0 0 LINC-SEC14L3-1 known 0 0 0 0 LINC-SEC14L4-1 known 0 0 0 0 LINC-SEPT3-1 known 0 0 0 0 LINC-SEPT5-1 known 0 0 0 0 LINC-SEPT5-2 known 0 0 0 0 LINC-SEPT5-3 known 0 0 0 0 LINC-SEZ6L-1 known 0 0 0 0 LINC-SEZ6L-2 known 0 0 0 0 LINC-SEZ6L-3 known 0 0 0 0 LINC-SHANK3-1 known 0 0 0 0 LINC-SHANK3-2 known 0 0 0 0 LINC-SLC25A1-1 known 0 0 1 0 LINC-SLC5A1-1 known 0 1 0 0 LINC-SLC5A1-2 known 0 0 0 0 LINC-SLC5A1-3 known 0 0 0 0 LINC-SLC5A4-1 known 0 0 0 0 LINC-SLC5A4-2 known 0 0 0 0 LINC-SLC7A4-1 known 0 0 0 0 LINC-SPECC1L-1 known 0 0 0 0 LINC-SPECC1L-2 known 7 3.999996 6.22433 0 LINC-SPECC1L-3 known 0 0 0 0 LINC-SSTR3-1 known 0 0 0 0 LINC-SYN3-1 known 0 0 0 0 LINC-SYN3-2 known 0 0 0 0 LINC-SYN3-3 known 0 0 0 0 LINC-TANGO2-1 known 0 0 0 1 LINC-TBC1D22A-1 known 1 0 4 3 LINC-TBC1D22A-2 known 0 0 0 0 LINC-TBC1D22A-3 known 0 0 0 0 LINC-TBC1D22A-4 known 0 0 0 0 LINC-TBC1D22A-5 known 0 0 0 0 LINC-TBC1D22A-6 known 0 0 0 0 LINC-TBC1D22A-7 known 0 0 0 0 LINC-TBC1D22A-8 known 0 0 0 0 LINC-TBC1D22A-9 known 0 0 0 0 LINC-TCF20-1 known 0 0 1 0 LINC-TCF20-2 known 0 0 0 0 LINC-TEF-1 known 2 0 1 0 LINC-TEX33-1 known 0 0 0 0 LINC-TFIP11-1 known 2 0 2 1 LINC-THOC5-1 novel 0 1 3 0 LINC-TMEM184B-1 known 1 0 0 0 LINC-TMEM184B-2 known 0 1 0 0 LINC-TMEM191B-1 known 0 0 0 0 LINC-TMEM191B-2 known 2.50846 1.48692 6.01661 3.19848 LINC-TMEM191B-3 known 0 0 0 0 LINC-TMEM191C-1 known 8.49598 2.04085 28.74424 10.3335 LINC-TMEM191C-2 known 0 0 0 0 LINC-TOB2-1 known 0 0 0 0 LINC-TOM1-1 known 0 0 0 0 LINC-TOP3B-1 known 0 0 0 0 LINC-TOP3B-10 known 0 0 0 0 LINC-TOP3B-11 known 0 0 0 0 LINC-TOP3B-12 known 0 0 0 0 LINC-TOP3B-13 known 0 0 0 0 LINC-TOP3B-14 known 0 0 0 0 LINC-TOP3B-15 known 0 0 0 0 LINC-TOP3B-16 known 0 0 0 0 LINC-TOP3B-17 known 0 0 0 0 LINC-TOP3B-2 known 0 0 0 0 LINC-TOP3B-3 known 0 0 0 0 LINC-TOP3B-4 known 0 0 0 0 LINC-TOP3B-5 known 0 0 0 0 LINC-TOP3B-6 known 0 0 0 0 LINC-TOP3B-7 known 0 0 0 0 LINC-TOP3B-8 known 0 0 0 0 LINC-TOP3B-9 known 0 0 0 0 LINC-TTLL1-1 known 0 0 0 0 LINC-TTLL1-2 known 0 0 0 0 LINC-TXN2-1 known 0 0 0 0 LINC-TXN2-2 known 0 0 0 0 LINC-UPB1-1 known 0 0 0 0 LINC-UPK3A-1 known 0 0 0 0 LINC-UPK3A-2 known 0 0 0 0 LINC-USP18-1 known 0 0 0 0 LINC-USP18-2 known 0 0 0 0 LINC-USP41-1 known 0 0 0 0 LINC-VPREB1-1 known 0 0 0 0 LINC-VPREB1-10 known 0 0 0 0 LINC-VPREB1-11 known 7.999999 12 35.00004 12.99999 LINC-VPREB1-12 known 0 0 0 0 LINC-VPREB1-13 known 0 0 1 0 LINC-VPREB1-14 known 0 0 0 0 LINC-VPREB1-15 known 0 0 0 0 LINC-VPREB1-16 known 0 0 0 0 LINC-VPREB1-17 known 0 0 0 0 LINC-VPREB1-18 known 0 0 0 0 LINC-VPREB1-19 known 0 0 0 0 LINC-VPREB1-2 known 1 0 4 1 LINC-VPREB1-20 known 0 0 0 0 LINC-VPREB1-21 known 0 0 0 0 LINC-VPREB1-22 known 0 0 1 1 LINC-VPREB1-3 known 0 0 0 0 LINC-VPREB1-4 known 0 0 0 0 LINC-VPREB1-5 known 0 0 0 0 LINC-VPREB1-6 known 0 0 4 0 LINC-VPREB1-7 known 0 0 0 0 LINC-VPREB1-8 known 0 0 0 0 LINC-VPREB1-9 known 0 0 0 0 LINC-WNT7B-1 known 0 0 0.0105846 0 LINC-WNT7B-2 known 0 0 0.989415 0 LINC-XBP1-1 known 0 0 0 0 LINC-XBP1-2 known 0 0 0 0 LINC-XKR3-1 known 0 0 0 0 LINC-XKR3-10 known 0 0 0 0 LINC-XKR3-11 known 0 0 0 0 LINC-XKR3-2 known 0 0 0 0 LINC-XKR3-3 known 0 0 0 0 LINC-XKR3-4 known 0 0 0 0 LINC-XKR3-5 known 0 0 0 0 LINC-XKR3-6 known 0 0 0 0 LINC-XKR3-7 known 0 1 0 0 LINC-XKR3-8 known 0 0 0 0 LINC-XKR3-9 known 0 0 0 0 LINC-YWHAH-1 known 0 0 0 0 LINC-YWHAH-2 known 0 0 0 0 LINC-YWHAH-3 known 0 0 0 0 LINC-ZBED4-1 known 0 0 0 0 LINC-ZBED4-2 known 0 0 0 0 LINC-ZBED4-3 known 0 0 0 0 LINC-ZBED4-4 known 0 0 0 0 LINC-ZC3H7B-1 known 0 0 1 0 LINC-ZNF280B-1 known 0 0 0 0 LINC-ZNF280B-10 known 0 0 0 0 LINC-ZNF280B-11 known 0 0 0 0 LINC-ZNF280B-12 known 0 0 0 0 LINC-ZNF280B-13 known 0 0 0 0 LINC-ZNF280B-14 known 0 0 0 0 LINC-ZNF280B-15 known 0 0 0 0 LINC-ZNF280B-16 known 0 0 0 0 LINC-ZNF280B-17 known 0 0 0 0 LINC-ZNF280B-2 known 0 0 0 0 LINC-ZNF280B-3 known 0 0 0 0 LINC-ZNF280B-4 known 0 0 0 0 LINC-ZNF280B-5 known 0 0 0 0 LINC-ZNF280B-6 known 0 0 0 0 LINC-ZNF280B-7 known 0 0 0 0 LINC-ZNF280B-8 known 0 0 0 0 LINC-ZNF280B-9 known 0 0 0 0 LMF2 protein_coding 105.99998 91.00003 252.00020385144 171.00014 LRP5L protein_coding 2 1 11 0 LRRC74B protein_coding 0 0 0 0 LRRC75B protein_coding 6 4 19 5 LZTR1 protein_coding 68.0000400681485 68.99998 150.99999 42.999996 MAFF protein_coding 42 65.99996 140.0003435 84.0000168123 MAPK1 protein_coding 98.00003 82.00006 241.0003 122.00004 MAPK11 protein_coding 7.99999837 16 21.99997168467 12.00000054 MAPK12 protein_coding 26.99999 21.79345958 74.95762 27.30694 MAPK8IP2 protein_coding 1 0 1 2 MB protein_coding 0 0 0 0 MCAT protein_coding 23.00001 14.99999 16.00005 13 MCHR1 protein_coding 0 0 1 0 MCM5 protein_coding 29.9999715 40.99997462035 56.99993 156.00006 MED15 protein_coding 44.00003 56.999955 155.00005972 71.00008 MED15-AS-1 known 0 0 0 0 MEI1 protein_coding 0 0 4.98054 0 MFNG protein_coding 0 0 0 0 MGAT3 protein_coding 0 0 1 0 MICAL3 protein_coding 27.0000428 22.999952 89.99999 41.000030628491 MICALL1 protein_coding 35.00003 37.999958 68.162003 59.999998 MIEF1 protein_coding 33.00001 40.999990801347 78.00001 42.99999 MIF protein_coding 348.47253 403.54512 375.40524 250.73911 MIF-AS-1 known 2 3.9193 4.59453 1.26074 MIOX protein_coding 0 0 2 0 MKL1 protein_coding 16.0000384305772 27.0000000145731 80.00003 23 MLC1 protein_coding 1 0 1 0 MMP11 protein_coding 2 0 6.2128806 0 MN1 protein_coding 41.99997 38 210.000225 7 MORC2 protein_coding 25.999958 21.999956 62.00004 37.99998 MORC2-AS-1 known 0 0 0 0 MOV10L1 protein_coding 3 1 4 1 MPPED1 protein_coding 0 0 0 0 MPST protein_coding 65.99994 73.99998 62.77687 41.99996 MRPL40 protein_coding 22.000042118 17 27.000003047 24.00005176588 MTFP1 protein_coding 0 2.29045 7 8 MTMR3 protein_coding 31.00002753 26.978202 108.969346 30.995582737 MYH9 protein_coding 1619.00362207224 1730 7104.00308 5834 MYO18B protein_coding 0 0 0 0 MYO18B-AS-1 known 0 0 0 0 MYO18B-AS-2 known 0 0 0 0 MYO18B-AS-3 known 0 0 0 0 NAGA protein_coding 23.00005 37.0000243 79 40.99998 NCAPH2 protein_coding 27.00002 28.99995 46.78297 53.00003 NCF4 protein_coding 0 0 0 0 NCF4-AS-1 known 0 0 0 0 NDUFA6 protein_coding 52 62 102 70 NEFH protein_coding 2 2 2 1 NEFH-AS-1 known 0 0 0 0 NF2 protein_coding 47.00002 58.99998453 150.99998 147.99997 NFAM1 protein_coding 0 0 0 0 NIPSNAP1 protein_coding 56 36 86 24.9999 NOL12 protein_coding 12.99999 7 17 23.99997 NPTXR protein_coding 2 0 6 10 NUP50 protein_coding 49.99998 46.000051 72.0000317 89.000001607 ODF3B protein_coding 14.039506 13.26031 16.960447 0 OR11H1 protein_coding 0 0 0 0 OSBP2 protein_coding 0 0 3.9999989237 4 OSBP2-AS-1 known 0 0 0 0 OSM protein_coding 0 0 0 0 P2RX6 protein_coding 1 2 8.999994 0 P2RX6-AS-1 known 1 1 3.85333 2 PACSIN2 protein_coding 41.99997158893 34.000005444 97.99999 94.0000362151 PANX2 protein_coding 2 1 10 0 PARVB protein_coding 20.00002763 29.0000316 35.00004102143 26 PARVB-AS-1 known 0 0 0 0 PARVG protein_coding 0 0 0 0 PARVG-AS-1 known 1 0 2.08117 0 PARVG-AS-2 known 0 0 0 0 PATZ1 protein_coding 16 7.99999852999 52.99999 15 PATZ1-AS-1 known 0 0 0 0 PDGFB protein_coding 0 0 0 0 PDXP protein_coding 16 9.99999 18 25 PES1 protein_coding 47.99998 43.999952116 114.0000290985 82.9999546 PES1-AS-1 known 0 0 0 0 PEX26 protein_coding 40.89566 29.00001 94 31.94508 PEX26-AS-1 known 0 0 0 0 PHF21B protein_coding 0 0 0 0 PHF5A protein_coding 15.99999 19 27 13.99997 PI4KA protein_coding 29.99552 42.47221 196.094083 74.02848028816 PICK1 protein_coding 2 2.999996 12 6 PICK1-AS-1 known 0 1 0 0 PIK3IP1 protein_coding 11 6 31.999950221021 7 PIM3 protein_coding 22 16 46.00005 25.00004 PISD protein_coding 26.00001585 21.999999 42.99998499 20.0000001 PISD-AS-1 novel 0 0 1 0 PITPNB protein_coding 43.00002 60 127.00006 73.99995 PIWIL3 protein_coding 0 0 0 0 PKDREJ protein_coding 0 0 0 1 PLA2G3 protein_coding 0 0 0 0 PLA2G6 protein_coding 4.000004707 1 16.91065 3 PLA2G6-AS-1 known 0 1 4.84174 1 PLXNB2 protein_coding 221.00045 209.00054 818.9993 294.00028 PMM1 protein_coding 41.99996 61.00003 60.92284 49.99999 PNPLA3 protein_coding 1.999998 2.000001 24.99997 13 PNPLA5 protein_coding 0 0 0 0 POLDIP3 protein_coding 58.9999773 47.999984 183.99970340609 87.00004 POLR2F protein_coding 42.9999471801 35.999980023117 54.99999 27.00003 POLR3H protein_coding 41.188513712 48.6273200958032 67.146310539725 53.6665958 POTEH protein_coding 0 0 1 0 POTEH-AS-1 known 0 0 0 0 PPARA protein_coding 23.99998 29 65.00003 19.99995 PPIL2 protein_coding 20.41928 22.9238945678 69.641448818 38.999995 PPM1F protein_coding 33.00001 31.97769 85.8511 45.9664706 PPP6R2 protein_coding 47.000007 43.00005 140.0000501802 51.00004 PRAME protein_coding 0 0 1 0 PRAME-AS-1 known 0 0 0 0 PRODH protein_coding 0 1.0000000679637 0 0 PRR14L protein_coding 15.0000253 17.0000163 57.000024866031 22.99998 PRR34 protein_coding 0 1 0 0 PRR34-AS-1 known 12 10 33.99999 6.999995 PRR5 protein_coding 4.00000415 9 5 4 PRR5-ARHGAP8 protein_coding 0 0 0 0 PVALB protein_coding 0 0 0 0 PVALB-AS-1 known 0 0 0 0 RAB36 protein_coding 7 3 19 8 RABL2B protein_coding 10.000005 8 22.81509198016 14 RABL2B-AS-1 known 12.99998 10.00000061 32.1849 19.00003 RAC2 protein_coding 1 1 6 3 RANBP1 protein_coding 71.03224 119.2596 93 158.99997 RANGAP1 protein_coding 119.00038923579 131.99974 524.000100482193 384.9995 RASD2 protein_coding 0 1 0 0 RASL10A protein_coding 0 0 0 0 RBFOX2 protein_coding 130.47848 131.39521 407.912287 170.327507114 RBFOX2-AS-1 novel 8.5218 10.6048 2.08799 3.67254 RBX1 protein_coding 43.00004 56.00004696 65.99999 40.00004 RFPL1 protein_coding 0 0 0 0 RFPL1-AS-1 known 0 0 1 0 RFPL2 protein_coding 0 0 0 0 RFPL3 protein_coding 0 0 0 0 RFPL3-AS-1 known 0 0 0 0 RFPL3S protein_coding 1 0 1 0 RFPL3S-AS-1 known 1 0 0 0 RFPL3S-AS-2 known 0 0 0 0 RGL4 protein_coding 1.216609947 6.45775 4.5197616557 0 RGL4-AS-1 known 22.783393 9.54225 49.48024 5 RHBDD3 protein_coding 16.9999924 22.000019293 44.9999989 11.99999 RIBC2 protein_coding 1 1 0 1 RIMBP3 protein_coding 0 0 3 0 RIMBP3B protein_coding 0 0 0 0 RIMBP3C protein_coding 0 0 0 0 RNF185 protein_coding 41.6051 26.99995 72.99995 27.99998 RNF185-AS-1 novel 0 3 1 1 RNF185-AS-2 known 0.394927 0 0 0 RNF215 protein_coding 4.999997 11 36.26549 14.99999 RP1-130H16.18 protein_coding 0 0 0 0 RP1-37E16.12 protein_coding 0 0 0 0 RP4-539M6.19 protein_coding 4 4.2549836832 0 0 RP4-539M6.19-AS-1 known 0 0 0 0 RPL3 protein_coding 3706.997905 4293.002425 3402.99769010357 2030.997643 RPS19BP1 protein_coding 48 55.99998 46.99998 30.00002 RRP7A protein_coding 49.00001 68.966923805 72.87475 100.95873 RRP7A-AS-1 known 0 0 0 0 RSPH14 protein_coding 0 0 0 0 RTCB protein_coding 44.00004 48 108 63 RTN4R protein_coding 0 0 0 0 SAMM50 protein_coding 43.99996 33.00001 69 51 SAMM50-AS-1 known 0 0 0 0 SBF1 protein_coding 113 113 268.99975 175.999938 SCARF2 protein_coding 94 81.99996041 158.0003185 43 SCO2 protein_coding 20.9062 16.5564 25.6045 12 SCO2-AS-1 known 6.06845 0 2.39549 0 SCUBE1 protein_coding 2 0 1 0 SCUBE1-AS-1 known 0 0 0 0 SDF2L1 protein_coding 15 19 24 33 SEC14L2 protein_coding 13.000002626 10.4545671 15.0000010653773 18.00000076 SEC14L3 protein_coding 0 0 0 0 SEC14L3-AS-1 known 0 0 0 0 SEC14L4 protein_coding 0 0 0 0 SEC14L4-AS-1 known 0 0 0 0 SEC14L6 protein_coding 0 0 0 0 SELM protein_coding 335.00013 323.99983 217.01629 64.00003 SELO protein_coding 27.99998 20 55 22.99998 SELO-AS-1 known 1 0 2 0 SEPT3 protein_coding 0 0 0 0 SEPT5 protein_coding 31.746726 42.044300707682 45.612558 29.9466 SEPT5-AS-1 known 0 0 0 0 SERHL2 protein_coding 2 1 0 1.04132 SERHL2-AS-1 known 3 1.03306 4.12522 1 SERPIND1 protein_coding 0 0 1 0 SEZ6L protein_coding 0 0 0 0 SF3A1 protein_coding 55.99998 58.9999142949 161.98199 98.000053 SFI1 protein_coding 6.000002 6.000001 21.999995 8.9999996 SGSM1 protein_coding 0 0 0 0 SGSM3 protein_coding 32 23.99998 56 27.99995 SH3BP1 protein_coding 9.99999 13.0000054089 25.0000058418 7.000004 SH3BP1-AS-1 known 0 0 0 0 SHANK3 protein_coding 10 12.00004 24.999975 9 SHISA8 protein_coding 0 0 0 0 SLC16A8 protein_coding 1 0 1 0 SLC25A1 protein_coding 76.99996 86 113.00002 54.99991 SLC25A17 protein_coding 13 14.00000953495 15.999967 11 SLC25A17-AS-1 known 0 0 0 0 SLC25A18 protein_coding 2 0 1 0 SLC25A18-AS-1 known 0 0 0 0 SLC2A11 protein_coding 4.0000003 2.151870944 18.000007 1 SLC2A11-AS-1 known 0 0 0 0 SLC35E4 protein_coding 10 2.99346 14 15 SLC5A1 protein_coding 0 0 0 0 SLC5A1-AS-1 known 0 0 0 0 SLC5A4 protein_coding 0 0 0 0 SLC5A4-AS-1 known 0 0 0 0 SLC7A4 protein_coding 0 0 0 0 SLC7A4-AS-1 known 0 0 0 0 SMARCB1 protein_coding 39.99999 64 99 57.999978 SMC1B protein_coding 0 0 1 0 SMDT1 protein_coding 20.99995 20.99998 40 14 SMTN protein_coding 35.9999620741013 50.9999950197 84.99998 281.999811 SMTN-AS-1 known 0 0 2 0 SNAP29 protein_coding 45.00001 29 67.3481 27.00003 SNAP29-AS-1 known 0 0 0.651902 0 SNRPD3 protein_coding 47.00005 56.67939 75.88928 67.20507 SNU13 protein_coding 52.9999900220242 45.00008107733 100.00007369 65.00007 SOX10 protein_coding 0 0 0 0 SPECC1L protein_coding 61.000004 58.99996 122.44797 78 SPECC1L-ADORA2A protein_coding 0 0 2.73992 0 SREBF2 protein_coding 66.9709 67 185.00011 90.9362 SREBF2-AS-1 known 1.05788 1 0 1.0638 SRRD protein_coding 7.184988 8.87179 17.067897 16.27072 SSTR3 protein_coding 0 0 0 0 ST13 protein_coding 155.0004 142 344.00027 162.00031335 SULT4A1 protein_coding 0 2 1 0 SULT4A1-AS-1 known 0 0 0 0 SUN2 protein_coding 90.24523 71.80237 290.49966192 207.81487 SUN2-AS-1 known 0 0 0 0 SUN2-AS-2 known 0.331585 0 3.82677 0 SUSD2 protein_coding 0 0 0 0 SYCE3 protein_coding 0 0 0 0 SYN3 protein_coding 0 0 0 0 SYNGR1 protein_coding 13 13.999999 35.00002 8.000005 SYNGR1-AS-1 novel 0 0 0 0 TAB1 protein_coding 24 20 55 18 TANGO2 protein_coding 13.86016 16.9999991 32.00000164 14.999997844 TANGO2-AS-1 known 2.97178 2 5 2 TANGO2-AS-2 known 0 0 2 0 TBC1D10A protein_coding 37.000007276 26.999990761137 51.1726646 18.99997 TBC1D10A-AS-1 known 0 0 1 0 TBC1D22A protein_coding 16.000003 12.000018 29.99991 14.0000091 TBX1 protein_coding 1 0 2.9999960216 0 TCF20 protein_coding 16.99997 23.00001 60.00004 38 TCN2 protein_coding 8 5 12.999992 2 TEF protein_coding 12 13.00001 31 11 TEX33 protein_coding 0 0 0 0 TFIP11 protein_coding 17.954322 16.128206244653 43.932009133 15.729247 THAP7 protein_coding 20.999987 7 19.72094 24 THAP7-AS-1 known 0 0 5.27905 1 THOC5 protein_coding 20.00003 31.00004 63.0000296798944 19.00005762855 TIMP3 protein_coding 276 209 663 229 TMEM184B protein_coding 142.803010377562 136.0003021 337.000230906 147.00011 TMEM184B-AS-1 known 0 0 0 0 TMEM184B-AS-2 known 7.19668 0 0 0 TMEM191B protein_coding 0 0 0 0 TMEM191C protein_coding 0 0 1 2 TMEM211 protein_coding 0 0 0 0 TMPRSS6 protein_coding 0 0 0 0 TNFRSF13C protein_coding 0 0 0 0 TNRC6B protein_coding 19.0000211452 18.9999967372 70.00007 34.99997646646 TOB2 protein_coding 49 49.99997 140.9997 33.999973 TOM1 protein_coding 65.00004 46.99994830218 90.0000436038 25.00003 TOM1-AS-1 known 0 0 0 0 TOMM22 protein_coding 29 28.00002 43 24.99998 TOP3B protein_coding 7.9582 9.994165 28.617487 14.95341 TOP3B-AS-1 known 4.04181 1.02811 17.5756 3.080108 TPST2 protein_coding 25.99998 29.99998 19.00308 7.9999933678 TRABD protein_coding 21.00001 22.0000181162 48.64669 30.99995447 TRABD-AS-1 known 0 0 3.35332 0 TRIOBP protein_coding 282.99997 226.99976 289.99979 232.0001 TRMT2A protein_coding 32.967708 19.74048 58.999966 19.999992 TRMU protein_coding 20.00000693 16.99999 50.99999933 32.00001 TSPO protein_coding 276.99952 284.9997 235.9998 131.99992 TSSK2 protein_coding 0 0 0 2 TSSK2-AS-1 known 0 0 0 0 TST protein_coding 22 25.99996 31.00001 27.00002 TTC28 protein_coding 51.949928975 31.646268 131.35496 34.0000120342821 TTC28-AS-1 known 5.050100145821 5.353687 30.73551736 2 TTC38 protein_coding 15.99999 15 34.00001 7 TTLL1 protein_coding 6.999995 7.000003836698 14.00004 3.000003348 TTLL1-AS-1 known 0 0 0 0 TTLL12 protein_coding 43 41.00002 43.99999 70.00003 TTLL8 protein_coding 0 0 0 0 TUBA8 protein_coding 1.34851 0 0 0 TUBA8-AS-1 known 0 0 6.00344 1.05488 TUBGCP6 protein_coding 30 20.000001 99.00008 31.000001 TXN2 protein_coding 45.99991 47.000029 79.9999927 35.99999 TXNRD2 protein_coding 27.138025 24.9999858 48.999972 27.999991483 TYMP protein_coding 139.98599 131.183290098866 108.039470075597 34.99995535 U51561.1 protein_coding 0 0 0 0 UBE2L3 protein_coding 93 99 182 141.99976 UFD1L protein_coding 53.99994 56.00003 110.00005 72.00002 UFD1L-AS-1 known 0 0 0 0 UFD1L-AS-2 known 0 0 0 0 UPB1 protein_coding 0 0 1 0 UPB1-AS-1 known 1 0 1 0 UPK3A protein_coding 0 0 0 0 UQCR10 protein_coding 50.00005 32.99995 38 23 USP18 protein_coding 6 4 15.9695 8 USP41 protein_coding 0 1 1.0305 0 USP41-AS-1 known 0 0 0 0 VPREB1 protein_coding 0 0 0 0 VPREB3 protein_coding 0 0 0 0 WBP2NL protein_coding 0 0 1 1 WNT7B protein_coding 0 0 0 0 XBP1 protein_coding 79.00005 81 219.99956 75 XBP1-AS-1 known 2 0 0 0 XKR3 protein_coding 0 0 0 0 XPNPEP3 protein_coding 7.999998 5.999995 24.99998 11 XRCC6 protein_coding 170 157 373.99994 320.9999 XXbac-B562F10.12 protein_coding 0 0 0 0 YDJC protein_coding 15 7.999988 19.000030741 7.99999 YPEL1 protein_coding 6.580723 3.0761 19.40197 0 YWHAH protein_coding 79.00000165523 91 137.00016 169.00025 YWHAH-AS-1 known 0 0 0 0 ZBED4 protein_coding 14 15 38 19 ZC3H7B protein_coding 241.00015 217.99951 1243.0042 292.99985 ZDHHC8 protein_coding 59.00003 46.99995 132.99998 51.99998 ZMAT5 protein_coding 10 18.00003 21 19 ZNF280A protein_coding 0 0 0 0 ZNF280B protein_coding 0 3 5 1 ZNF70 protein_coding 5.5216 1 13.457 8 ZNF70-AS-1 novel 0.478401 0 10.543 0 ZNF74 protein_coding 7 5 19 4 ZNRF3 protein_coding 6 4.000003 13 10

ID Type dPDLSCs1 dPDLSCs2 uPDLSCs1 uPDLSCs2 A4GALT protein_coding 196.8274 67.0041 105.359 175.9435 AC007326.1 protein_coding 0 0 0 0 ACO2 protein_coding 358.5766 189.134 717.888 522.905 ACR protein_coding 0 0 0 0 ADM2 protein_coding 13.656 2.84806 158.72 22.9126 ADORA2A protein_coding 27.0996 0 82.6763 0 ADSL protein_coding 391.898700854123 448.29643 986.48165904 1009.7057684 AIFM3 protein_coding 0 0 0 0 AL008723.1 protein_coding 0 0 0 0 ALG12 protein_coding 235.2041 80.0283 600.7049 132.5399 ALG12-AS-1 known 0 0 28.4306 0 ANKRD54 protein_coding 152.0115 222.832 513.4278 442.074 AP000349.2 protein_coding 0 20.1162 29.0608 40.0984 AP000350.10 protein_coding 35.0856 83.0956 0 0 AP000350.10-AS-1 known 0 0 2.29405 0 AP1B1 protein_coding 210.574400477602 134.319 939.6781209 528.1995 AP1B1-AS-1 novel 0 0 0 0 APOBEC3A protein_coding 0 0 0 0 APOBEC3B protein_coding 26.2432 64.5615 128.19 144.1432 APOBEC3B-AS-1 known 0 0 0 0 APOBEC3C protein_coding 183.7849 122.539 408.249 368.095 APOBEC3D protein_coding 7.97733 0 42.4292 0 APOBEC3F protein_coding 66.82862 0 298.8205 0 APOBEC3G protein_coding 139.4928 79.83018 315.3487 45.6834273 APOBEC3H protein_coding 0 0 0 0 APOL1 protein_coding 222.676 339.4348 1131.3552 187.3367 APOL1-AS-1 known 199.179 0 104.559 236.075 APOL2 protein_coding 463.9681 266.8677 986.0123 220.4927 APOL3 protein_coding 64.39986 49.58205 416.9154 10.2266 APOL4 protein_coding 55.7087 0 0 0 APOL5 protein_coding 0 0 0 0 APOL6 protein_coding 26.5376 17.5408 220.979 64.3059 APOL6-AS-1 novel 0 0 0 0 ARFGAP3 protein_coding 354.7215 231.7465 921.7921 653.073627731 ARFGAP3-AS-1 known 28.7689 0 0 0 ARHGAP8 protein_coding 0 0 44.197 0 ARSA protein_coding 341.6707 230.4783 1316.348144255 418.2154 ARVCF protein_coding 11.9109 40.9851 110.5153142 54.99577 ASCC2 protein_coding 330.2464 132.6491 1255.043 384.5523 ASPHD2 protein_coding 0 0 29.6266 11.9793 ATF4 protein_coding 4547.136 3245.1328 13111.3728 4197.2644 ATP5L2 protein_coding 0 0 0 0 ATP6V1E1 protein_coding 592.5724 406.651 1865.1741 853.741 ATXN10 protein_coding 317.2997 572.5139 2146.8927 1420.9359 ATXN10-AS-1 known 0 0 0 0 BAGE5 protein_coding 0 0 0 0 BAIAP2L2 protein_coding 24.0212 12.4646 19.4291 39.7428 BAIAP2L2-AS-1 known 10.9052 8.97759 14.7458 0 BCL2L13 protein_coding 517.7357542 298.40744 1341.14790113568 592.72676649067 BCR protein_coding 73.368585 111.165313 450.25069 239.2885968 BID protein_coding 512.13427497451 523.526443985 1890.5691180397 1109.5977 BID-AS-1 known 17.4602 15.5058 61.6713 0 BIK protein_coding 0 0 0 0 BPIFC protein_coding 0 0 0 0 BRD1 protein_coding 63.6481 131.327 327.281 132.0756 C1QTNF6 protein_coding 186.71568 119.4414 196.4108 116.632 C1QTNF6-AS-1 known 0 0 0 0 C22orf15 protein_coding 0 0 32.9877 50.379 C22orf23 protein_coding 32.9921 0 45.3207 0 C22orf23-AS-1 known 51.1732 21.1523 113.168 72.4339 C22orf29 protein_coding 52.321 61.86691748 263.902620917 66.6386 C22orf31 protein_coding 0 0 0 0 C22orf39 protein_coding 153.7338 89.0561887 394.3026 122.09046 C22orf42 protein_coding 0 6.8026 10.7171 0 C22orf46 protein_coding 81.6493 71.6072 299.474 62.2053 CABIN1 protein_coding 109.370921637 214.71728199391 557.0857 212.150336903088 CABP7 protein_coding 0 0 0 0 CACNA1I protein_coding 0 0 0 0 CACNG2 protein_coding 0 0 0 0 CARD10 protein_coding 3.55728 27.02441 47.49465 93.7942 CBX6 protein_coding 266.741 172.8136 620.8696 350.9749 CBX7 protein_coding 135.64156 57.24271 255.02028 74.8269 CBY1 protein_coding 339.2635 278.221 1013.878024462 289.5051 CBY1-AS-1 known 0 0 0 0 CBY1-AS-2 known 35.6558 31.0933 140.8786 0 CCDC116 protein_coding 0 0 0 0 CCDC117 protein_coding 237.923725005 168.3969891 225.7898 426.09783195 CCDC134 protein_coding 0 0 74.259 118.728 CCDC157 protein_coding 24.5404 5.05877 103.3341 0 CCDC188 protein_coding 57.7785 9.12596 241.821 16.1365 CCT8L2 protein_coding 0 0 0 0 CDC42EP1 protein_coding 254.816 170.13 781.118 483.453 CDC45 protein_coding 75.5018 105.4478 311.97284 264.6325158272 CDPF1 protein_coding 157.501 93.13238 234.2155 91.9876 CDPF1-AS-1 known 12.3192 0 26.6933 8.85292 CECR1 protein_coding 4.6583 0 5.79074 6.33238 CECR2 protein_coding 0 0 0 0 CECR5 protein_coding 276.21089412 142.1809 591.35563 283.3551 CECR5-AS-1 known 0 0 0 47.1262 CECR6 protein_coding 0 0 0 4.98384 CELSR1 protein_coding 0 0 0 0 CENPM protein_coding 132.83280105 165.022 250.005 717.8191 CERK protein_coding 259.8465 172.4946 416.1139 530.832 CHADL protein_coding 6.84332 19.8359 8.75394 0 CHCHD10 protein_coding 406.7471 125.2483 459.434 84.2073 CHEK2 protein_coding 118.473380480733 169.8745 517.3201 230.1221 CHKB protein_coding 355.504 241.2881 1019.8009 241.78637 CHKB-CPT1B protein_coding 0 0 72.44725 32.6293 CLDN5 protein_coding 0 0 0 0 CLTCL1 protein_coding 43.96595 17.06226 133.62406 7.97633 COMT protein_coding 2092.0993 1641.1355 7464.0084 3042.1683 CPT1B protein_coding 22.3048 45.41091 89.353900346559 125.0276 CRELD2 protein_coding 522.75525 294.5943 1509.4505 791.34030331 CRKL protein_coding 183.4072 113.8949 574.612 375.048 CRKL-AS-1 novel 0 0 78.7367 0 CRYBA4 protein_coding 0 0 0 0 CRYBB1 protein_coding 0 0 0 0 CRYBB2 protein_coding 0 33.1306 61.3973 33.0714 CRYBB3 protein_coding 0 0 0 0 CSDC2 protein_coding 5.42252 0 68.5564 7.42936 CSDC2-AS-1 known 0 0 0 0 CSF2RB protein_coding 0 0 0 0 CSNK1E protein_coding 1179.65488106 891.5761 5133.670684728 2057.97582 CSNK1E-AS-1 known 0 38.3604 0 78.5865 CSNK1E-AS-2 known 0 0 0 0 CU104787.1 protein_coding 0 0 0 0 CYB5R3 protein_coding 3941.56299 3507.9188 7131.55826 4861.05 CYP2D6 protein_coding 0 0 41.0322 0 CYP2D6-AS-1 known 59.4583 19.4001 80.4132 0 CYP2D7 protein_coding 0 0 43.9177 0 CYTH4 protein_coding 0 0 0 0 CYTH4-AS-1 known 0 0 0 0 DDT protein_coding 650.0537 441.047 1521.7949 623.127 DDTL protein_coding 0 10.6978 34.9173 0 DDX17 protein_coding 1388.9795 1060.782 4226.5383 1146.4901 DENND6B protein_coding 18.6627 26.12566 380.407 0 DENND6B-AS-1 known 0 0 0 0 DENND6B-AS-2 known 0 0 0 0 DEPDC5 protein_coding 50.5840211609993 73.6334768667089 291.81019184 85.02924 DERL3 protein_coding 16.5675 0 0 39.3935 DESI1 protein_coding 123.2054 79.94254333 491.7726 193.4237 DESI1-AS-1 known 0 0 0 90.6692 DGCR14 protein_coding 90.18198 110.7065 265.7377 223.4719 DGCR2 protein_coding 236.9151 158.73228 556.38440661279 235.192 DGCR2-AS-1 known 0 0 0 0 DGCR2-AS-2 known 0 0 0 0 DGCR6 protein_coding 0 0 17.027 0 DGCR6L protein_coding 1229.05 989.049 1155.87 1050.183 DGCR8 protein_coding 108.4805 171.94714815069 591.493602741514 279.4991 DMC1 protein_coding 19.351 52.9385 114.8052 105.5414 DNAJB7 protein_coding 0 0 14.8584 0 DNAL4 protein_coding 235.883 105.0022 558.797 179.93 DRG1 protein_coding 637.918 605.748 1596.119 797.015 DRICH1 protein_coding 0 0 0 0 DUSP18 protein_coding 51.31679 63.1548848 141.6057 104.52561 EFCAB6 protein_coding 0 0 25.90731 4.41548 EFCAB6-AS-1 known 0 0 0 0 EIF3D protein_coding 1390.0871851 1048.96620828059 3640.4789 1633.6672 EIF3L protein_coding 1644.19243533 1365.337 4120.45220633135 1794.093 EIF4ENIF1 protein_coding 50.33234 119.48637 680.7035 144.573 EIF4ENIF1-AS-1 known 0 0 0 0 EIF4ENIF1-AS-2 known 8.91101 0 27.6209 0 ELFN2 protein_coding 0 0 0 0 ELFN2-AS-1 known 0 0 0 0 EMID1 protein_coding 63.9661 97.1494 109.9732 38.3482 EMID1-AS-1 known 0 0 0 0 ENTHD1 protein_coding 0 0 0 0 EP300 protein_coding 88.1645 119.11422 460.517 294.837 EP300-AS-1 known 0 0 82.3304 17.6977 EP300-AS-2 known 0 0 0 0 EWSR1 protein_coding 701.44935 547.72058 3231.1855 2208.61825122155 FAM109B protein_coding 423.6017 312.3336 309.353 304.645 FAM118A protein_coding 256.73204 104.6874 502.4756 108.1909 FAM19A5 protein_coding 34.3881 17.74132 116.52015 55.3735 FAM227A protein_coding 2.7378 0 4.02426 0 FAM227A-AS-1 novel 0 0 0 0 FAM83F protein_coding 0 0 1.30477 0 FAM83F-AS-1 known 0 0 0 0 FBLN1 protein_coding 49512.316219887 28269.6418 10509.2758 2966.762 FBXO7 protein_coding 277.6398348 337.29261 942.2296 461.51397 FOXRED2 protein_coding 49.52501164 53.183428 190.4181 315.1265 FP325331.1 protein_coding 0 0 0 0 GAB4 protein_coding 0 0 0 0 GAL3ST1 protein_coding 0 0 0 0 GALR3 protein_coding 0 0 0 0 GAS2L1 protein_coding 376.0152 240.8223 562.6725 930.3780271 GATSL3 protein_coding 186.3701 97.2149 297.7929 67.5759 GCAT protein_coding 190.9668 111.3759 450.068 104.2008 GGA1 protein_coding 270.2258339081 149.0533275 1134.35716 506.8333 GGT1 protein_coding 34.3714 28.394 172.054 69.263 GGT2 protein_coding 0 0 0 0 GGT2-AS-1 known 0 0 0 0 GGT5 protein_coding 183.0455671 110.9041828 29.56759 0 GGTLC2 protein_coding 0 0 0 0 GGTLC3 protein_coding 0 0 0 0 GNAZ protein_coding 27.68121 3.70647 11.0371 45.99672 GNB1L protein_coding 146.3196 114.435184087 242.95151 288.75975 GP1BB protein_coding 13.0789 8.21723 75.5245 91.2715 GRAMD4 protein_coding 131.587995064 35.6322 291.8726 175.4649 GRAP2 protein_coding 0 0 0 0 GRK3 protein_coding 0 0 3.72182 14.29015 GRK3-AS-1 known 0 0 0 0 GSC2 protein_coding 0 0 0 0 GSTT2 protein_coding 31.296 0 0 0 GSTT2B protein_coding 0 18.1296 33.4414 0 GTPBP1 protein_coding 311.91594 147.3256 1028.287 521.0165 GTSE1 protein_coding 134.3649 115.657 271.931 519.9285 GUCD1 protein_coding 405.18979063052 604.0029 1271.3271662101 845.516046 GUCD1-AS-1 known 0 0 0 0 H1F0 protein_coding 1554.78 1165.22 2197.07 2073.39 HDAC10 protein_coding 285.9368 102.5298413 426.388744484305 218.857818 HIC2 protein_coding 12.2676 7.0348862876 41.09282 18.507 HIC2-AS-1 known 31.8851 0 0 27.6586 HIRA protein_coding 97.5535 105.458 210.182000091561 234.8795 HMGXB4 protein_coding 103.8353 77.3540602 409.243741504 543.342608044798 HMOX1 protein_coding 569.016 179.211 830.124 599.4298 HORMAD2 protein_coding 0 0 0 0 HORMAD2-AS-1 known 0 0 0 0 HORMAD2-AS-2 known 0 0.585289 2.88325 0.472524 HPS4 protein_coding 98.5757338 153.3326614567 269.4992 281.3265474 HSCB protein_coding 306.4484 120.5735 486.7876 280.8396 IFT27 protein_coding 91.2378 104.154532265 411.3047 222.13791 IGLL1 protein_coding 0 0 0 0 IGLL1-AS-1 known 0 0 0 0 IGLL5 protein_coding 0 0 0 0 IGLL5-AS-1 known 0 0 0 0 IGLL5-AS-2 known 0 0 0 0 IL17RA protein_coding 138.6837851 42.7827571362 341.2494 91.7607 IL17RA-AS-1 novel 0 0 24.1698 0 IL17RA-AS-2 known 0 0 0 0 IL17REL protein_coding 0 0 0 0 IL2RB protein_coding 3.55728 21.2441 0 0 INPP5J protein_coding 0 0 0 0 ISX protein_coding 0 0 0 0 JOSD1 protein_coding 458.3262 310.80066 1527.263 338.1277 KCNJ4 protein_coding 0 0 0 0 KCNJ4-AS-1 known 0 0 0 0 KCTD17 protein_coding 314.3708 217.9906 908.50317 384.30959 KDELR3 protein_coding 1556.412 1037.092 2484.099 1241.3739 KIAA0930 protein_coding 296.3116 155.0946 566.0817346 677.8112 KIAA1644 protein_coding 55.0791 24.7989 81.5932 44.908 KIAA1671 protein_coding 3.61921 0 24.56800332371 8.930620523977 KIAA1671-AS-1 known 0 0 0 0 KIAA1671-AS-2 known 0 0 3.79074 0 KLHDC7B protein_coding 0 0 6.24621 0 KLHL22 protein_coding 159.1846 130.0657 544.4493 186.5316 KREMEN1 protein_coding 325.029 420.627 632.367 157.58144 L3MBTL2 protein_coding 148.34270817328 85.1007474798 323.7281 303.242 L3MBTL2-AS-1 known 0 0 11.697 16.7857 LARGE1 protein_coding 31.82903 25.7636 231.7446 346.9108 LARGE1-AS-1 known 0 0 0 0 LARGE1-AS-2 known 0 0 0 0 LDOC1L protein_coding 110.195 65.7558 286.022 192.16 LGALS1 protein_coding 787301.5139 834446.706 620288.059 776018.9 LGALS2 protein_coding 0 0 72.7424 50.1642 LIF protein_coding 31.24087 6.16063 2773.995 1675.83 LIF-AS-1 known 0 0 173.032 218.829 LIF-AS-2 known 0 0 0 0 LIMK2 protein_coding 142.1032 98.3204 253.0698523 59.2945 LINC-AC007326.1-1 known 0 0 0 0 LINC-AC007326.1-2 known 0 0 0 0 LINC-ACR-1 known 0 0 0 0 LINC-ACR-2 known 0 0 0 0 LINC-ACR-3 known 0 0 0 0 LINC-AIFM3-1 known 0 0 30.8625 0 LINC-AP1B1-1 known 0 0 0 0 LINC-APOBEC3A-1 known 0 0 0 0 LINC-APOBEC3G-1 known 0 0 0 0 LINC-APOL3-1 known 0 0 0 0 LINC-APOL3-2 known 0 0 0 0 LINC-APOL3-3 known 0 0 0 0 LINC-APOL3-4 known 0 0 0 0 LINC-APOL3-5 known 0 0 0 0 LINC-APOL3-6 known 0 0 0 0 LINC-APOL4-1 known 0 0 0 0 LINC-APOL5-1 known 0 0 0 0 LINC-APOL6-1 known 0 0 0 0 LINC-ARFGAP3-1 known 0 0 0 0 LINC-ARFGAP3-2 known 0 0 0 0 LINC-ARFGAP3-3 known 40.5155 16.4478 30.5097 32.7691 LINC-ARFGAP3-4 known 0 0 0 0 LINC-ASPHD2-1 known 0 0 0 0 LINC-ATXN10-1 known 0 0 0 0 LINC-ATXN10-2 known 0 0 0 0 LINC-ATXN10-3 known 0 0 0 0 LINC-BAGE5-1 known 0 0 0 0 LINC-BAGE5-2 known 0 0 0 0 LINC-BAGE5-3 known 0 0 0 0 LINC-BCR-1 known 0 0 0 0 LINC-BCR-2 known 0 0 0 0 LINC-BCR-3 known 0 0 0 0 LINC-BCR-4 known 0 0 42.373 0 LINC-BCR-5 known 0 0 0 0 LINC-BCR-6 known 0 0 0 0 LINC-BID-1 known 0 0 0 0 LINC-BRD1-1 known 0 0 0 0 LINC-BRD1-10 known 0 0 0 0 LINC-BRD1-11 known 0 0 0 0 LINC-BRD1-12 known 0 0 0 0 LINC-BRD1-13 known 0 0 0 0 LINC-BRD1-14 known 0 0 0 0 LINC-BRD1-2 known 0 0 0 0 LINC-BRD1-3 known 0 0 0 0 LINC-BRD1-4 known 0 0 0 0 LINC-BRD1-5 known 0 0 0 0 LINC-BRD1-6 known 0 0 0 0 LINC-BRD1-7 known 0 0 0 0 LINC-BRD1-8 known 0 0 0 0 LINC-BRD1-9 known 0 0 0 0 LINC-C22orf42-1 known 0 0 0 0 LINC-C22orf42-2 known 0 0 0 0 LINC-C22orf42-3 known 0 0 0 0 LINC-CABIN1-1 known 0 0 0 0 LINC-CABIN1-2 known 0 0 0 0 LINC-CABP7-1 known 0 0 0 0 LINC-CACNG2-1 known 0 0 0 0 LINC-CACNG2-2 known 0 0 0 0 LINC-CBX7-1 known 0 0 0 0 LINC-CBX7-2 known 0 0 0 0 LINC-CBX7-3 known 0 0 0 0 LINC-CCDC188-1 known 79.5552 39.3265 302.637 129.9625 LINC-CCT8L2-1 known 0 0 0 0 LINC-CCT8L2-10 known 0 0 0 0 LINC-CCT8L2-11 known 0 0 0 0 LINC-CCT8L2-12 known 0 0 0 0 LINC-CCT8L2-13 known 0 0 0 0 LINC-CCT8L2-14 known 0 0 0 0 LINC-CCT8L2-15 known 0 0 0 0 LINC-CCT8L2-16 known 0 0 0 0 LINC-CCT8L2-2 known 0 0 0 0 LINC-CCT8L2-3 known 0 0 0 0 LINC-CCT8L2-4 known 19.21957 0 26.0606 0 LINC-CCT8L2-5 known 0 0 0 0 LINC-CCT8L2-6 known 0 0 0 0 LINC-CCT8L2-7 known 0 0 0 0 LINC-CCT8L2-8 known 0 0 0 0 LINC-CCT8L2-9 known 0 0 0 0 LINC-CDC42EP1-1 known 0 0 0 0 LINC-CECR1-1 known 0 0 0 0 LINC-CECR1-2 known 0 0 0 0 LINC-CECR1-3 known 0 0 0 0 LINC-CECR1-4 known 0 0 0 0 LINC-CECR2-1 known 0 0 0 0 LINC-CECR2-2 known 0 0 0 0 LINC-CECR2-3 known 0 0 0 0 LINC-CECR2-4 known 0 0 65.3583 0 LINC-CECR5-1 known 0 0 12.408 0 LINC-CECR6-1 known 0 0 0 0 LINC-CELSR1-1 known 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