Fix issue when uploading tsv format sample sheet without headers

lilab-bcb / altocumulus

Command line tool for submitting WDL jobs to Terra or Cromwell server.

https://altocumulus.readthedocs.io

BSD 3-Clause "New" or "Revised" License

7 stars 0 forks source link

Closed yihming closed 1 year ago

yihming commented 1 year ago

Cumulus workflows only consider two types of input sample sheet:

CSV format with header row;
TSV format without header row, which can be directly processed by WDL's read_tsv function.

For the second type, when uploading the sample sheet via transfer_sample_sheet function, the first row also needs to be considered.