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lilab-bcb
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altocumulus
Command line tool for submitting WDL jobs to Terra or Cromwell server.
https://altocumulus.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Added query command
#26
bli25
closed
2 years ago
0
handle duplicate sample
#25
asmariyaz23
closed
2 years ago
0
Upload fastq folders
#24
yihming
closed
2 years ago
0
Bug fix for temporary files created by `cromwell run` command
#23
yihming
closed
2 years ago
0
Bug fix for `cromwell get_logs` command
#22
yihming
closed
2 years ago
0
Add `-n` option to `cromwell list_jobs` command
#21
yihming
closed
2 years ago
0
List jobs
#20
asmariyaz23
closed
2 years ago
0
add --profile to upload command; update docs
#19
yihming
closed
2 years ago
0
Make sure float number are written exactly in updated json
#18
bli25
closed
2 years ago
0
Dependency
#17
asmariyaz23
closed
2 years ago
0
Do not show underlying cloud commands for brevity
#16
yihming
closed
2 years ago
0
aws profile argument
#15
rocherroche
closed
2 years ago
0
alto docs
#14
rocherroche
closed
2 years ago
0
List jobs
#13
rocherroche
closed
2 years ago
0
Fix bug in get_logs
#12
yihming
closed
2 years ago
0
Only print job's ID and final status for `--time-out` option in `cromwell run` command
#11
yihming
closed
2 years ago
0
For congee integration
#10
yihming
closed
2 years ago
0
Congee
#9
yihming
closed
2 years ago
0
For congee migration
#8
yihming
closed
2 years ago
0
Add get_logs and get_metadata subcommands of cromwell command
#7
yihming
closed
2 years ago
0
Fix issue when uploading bucket folder is specified
#6
yihming
closed
3 years ago
0
Fix a bug when uploading to cloud bucket
#5
yihming
closed
3 years ago
0
Upload local input data if needed
#4
yihming
closed
3 years ago
0
Add `cromwell abort` command
#3
yihming
closed
3 years ago
0
Make `alto upload` command pass tests
#2
yihming
closed
3 years ago
0
Add Cromwell commands
#1
yihming
closed
3 years ago
0
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