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lilab-bcb / cirrocumulus

Bring your single-cell data to life
https://cirrocumulus.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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statistical test #182

Closed SNOL2 closed 1 year ago

SNOL2 commented 1 year ago

Hello, thanks for this great project! I was wondering can we perform statistical test between different group? Thanks in advance!

joshua-gould commented 1 year ago

Please search for "differential expression" at https://cirrocumulus.readthedocs.io/en/latest/documentation.html

SNOL2 commented 1 year ago

I may not have expressed it clearly. I hope to perform statistical tests on specific genes in two groups (and display them on a violin plot if possible).

joshua-gould commented 1 year ago

Currently, the differential expression test is performed using all genes. You can display violin plots independently of differential expression results using the distributions tab - https://cirrocumulus.readthedocs.io/en/latest/documentation.html#distributions.

SNOL2 commented 1 year ago

Currently, the differential expression test is performed using all genes. You can display violin plots independently of differential expression results using the distributions tab - https://cirrocumulus.readthedocs.io/en/latest/documentation.html#distributions.

got it. Thanks!