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lilab-bcb / cirrocumulus

Bring your single-cell data to life
https://cirrocumulus.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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The package is not up-to-date #212

Closed ShuonanChen closed 1 day ago

ShuonanChen commented 2 days ago

Hi! I cannot launch the example data with the app -- the error message below:

ImportError: cannot import name 'Index' from 'anndata._core.index' (/opt/miniconda3/lib/python3.12/site-packages/anndata/_core/index.py)

it seems that the issue is that most up-to-date pip package still has this line from anndata._core.index import Index, _subset from /opt/miniconda3/lib/python3.12/site-packages/cirrocumulus/sparse_dataset.py line 25

anndata version 0.10.9 and cirrocumulus version 1.1.57. Could you suggest how to resolve this, thank you!

joshua-gould commented 1 day ago

Fixed in version 1.1.58. Thanks.