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lilab-bcb / pegasus

A tool for analyzing trascriptomes of millions of single cells.
https://pegasus.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Harmony data integration accepts multiple attributes as batch key #287

Closed yihming closed 9 months ago

yihming commented 9 months ago

User can provide a list of attributes to batch parameter of run_harmony function for data integration. E.g.

pegasus.run_harmony(data, batch=['attr1', 'attr2'])