Closed yihming closed 3 months ago
Rename fgsea function to gsea, and modify:
fgsea
gsea
method
"blitzgsea"
"fgsea"
min_size
5
max_size
4000
symmetric=False
permutations=2000
center=False
-Inf
Inf
Rename write_fgsea_results_to_excel to write_gsea_results_to_excel
write_fgsea_results_to_excel
write_gsea_results_to_excel
Rename
fgsea
function togsea
, and modify:method
parameter: default is"blitzgsea"
; alternatively support"fgsea"
min_size
to5
, andmax_size
to4000
symmetric=False
,permutations=2000
andcenter=False
by default-Inf
orInf
NES scores.Rename
write_fgsea_results_to_excel
towrite_gsea_results_to_excel