pdb_seq.py -a adds a space between > and tag line which is not read by SEAVIEW

[GoogleCodeExporter]

What steps will reproduce the problem?
1. Using pdb_seq.py -a fetches the sequence in fasta format from the atom 
coordinates
2.
3.

What is the expected output? What do you see instead?
Using pdb_seq.py -a fetches the sequence in fasta format from the atom 
coordinates but it adds a space between > and the fasta tag line. This space is 
not a problem if you are using it to open in a text editor but if you open the 
sequence in programs like SEAVIEW which I extensively use and must be many 
others it doesn't open. So in the next version please remove this space between 
the > and the tag line. 

What version of the product are you using? On what operating system?

Please provide any additional information below.

Original issue reported on code.google.com by Rohit.Fa...@gmail.com on 26 Mar 2013 at 12:09

[GoogleCodeExporter]

Thanks for pointing out the problem.  I've fixed the code in the source tree 
(you can download the updated script by browsing the source directly for 
pdb_fasta.py).  

Mike

Original comment by harmsm@gmail.com on 1 Apr 2013 at 11:41

• Changed state: Fixed

[GoogleCodeExporter]

Correction: pdb_seq.py.  But you knew that, probably...

Original comment by harmsm@gmail.com on 1 Apr 2013 at 11:42