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lima1 / PureCN

Copy number calling and variant classification using targeted short read sequencing
https://bioconductor.org/packages/devel/bioc/html/PureCN.html
Artistic License 2.0
127 stars 32 forks source link

Commercial use of PureCN #346

Closed jennyp76 closed 8 months ago

jennyp76 commented 8 months ago

Hi, Can PureCN be used as a CNV caller for commercial pipeline?

Thanks, jen

Describe the issue A clear and concise description of what the issue is.

To Reproduce Copy and paste your complete command line arguments from PureCN.R. If possible and potentially relevant, also copy the output of NormalDB.R and Coverage.R.

Expected behavior A clear and concise description of what you expected to happen.

Log file Please copy and paste the log file (Sampleid.log) of a representative example

B-allele frequency plot Please take a screenshot of the B-allele frequency plot of the maximum likelihood solution (Sampleid.pdf).

Session Info Please start R, type sessionInfo() and paste the output.

lima1 commented 8 months ago

Yes, it comes under the standard open source license used by most R packages. If you make non trivial changes and share the modifications outside your company, you are technically expected to make the code available under same license etc.

jennyp76 commented 8 months ago

@lima1 Thank you for the quick reply. Just for double-checking...so there's no groundwork that needs to be done for using PureCN in return for cost?

Thank you

lima1 commented 8 months ago

Nope, you all good. If you change the PureCN code, the license says you should publicly provide the code when you share it. Otherwise you can do what you want with it.