Closed CarlKCarlK closed 4 years ago
More info:
Summary:
Works on Durbin, but on Ubuntu is installing athr.h, but not athr_export.h
Details:
I was able to get everything working on Durbin under Windows (after installing cmake, zlib, zstd, and athr) I notice that on Durbin the /user/lib/include looks like:
(base) carlk@kadie2:~$ ls /usr/local/include
athr_export.h athr.h bgen bgen.h zbuff.h zdict.h zstd_errors.h zstd.h
On Ubuntu, I see only athr.h:
(base) carlk@kadie2:~$ ls /usr/local/include
athr.h
When I remove that header file and reinstall athr, I still don't see the expected athr_export.h:
(base) carlk@kadie2:~$ sudo mv /usr/local/include/athr.h ignoreathr.h
(base) carlk@kadie2:~$ curl -fsSL https://git.io/JerYI | GITHUB_USER=horta GITHUB_PROJECT=almosthere DO_CMD=sudo bash
[0/7] Library(almosthere==1.0.15)
[1/7] Downloading... done.
[2/7] Extracting... done.
[3/7] Configuring... done.
[4/7] Compiling... done.
[5/7] Testing... done.
[6/7] Installing...
[ 60%] Built target athr
[ 70%] Built target test_example3
[ 80%] Built target test_example2
[ 90%] Built target test_example4
[100%] Built target test_example1
Install the project...
-- Install configuration: "Release"
-- Installing: /usr/local/lib/libathr.so.1.0.14
-- Up-to-date: /usr/local/lib/libathr.so.1
-- Up-to-date: /usr/local/lib/libathr.so
-- Set runtime path of "/usr/local/lib/libathr.so.1.0.14" to "/usr/local/lib"
-- Installing: /usr/local/include/athr.h
-- Installing: /usr/local/lib/cmake/athr/athr-targets.cmake
-- Installing: /usr/local/lib/cmake/athr/athr-targets-release.cmake
-- Installing: /usr/local/lib/cmake/athr/athr-config.cmake
-- Up-to-date: /usr/local/lib/cmake/athr/librt/FindLibRt.cmake
done.
[7/7] Finalizing... done.
(base) carlk@kadie2:~$ ls /usr/local/include
athr.h
Closing as I think we have fixed it.
Greetings, When I try to build via the curl command on Ubuntu (under Windows), I get a messing header message.
I then tried building the 'almost there' project first. That project worked, but did not fix the missing header when building bgen.
Thanks, Carl