limix pandas-plink issues

limix / pandas-plink

PLINK reader for Python.

MIT License

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issues

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Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

#37 dependabot[bot] opened 4 days ago
0
set pure=False in call to Dask to avoid hashing buff

#36 bgorissen closed 2 months ago
1
pandas_plink is slow since Dask 2024.2

#35 bgorissen closed 2 months ago
3
Chromosome names for X, Y and MT?

#34 dbolser closed 2 months ago
2
Update usage.rst

#33 dbolser closed 6 months ago
3
write_plink1_bin() gives error "TypeError: to_csv() got an unexpected keyword argument 'line_terminator'".

#32 ddbhasin closed 2 months ago
4
replaced deprecated pandas lineterminator arg

#31 rborder closed 2 months ago
6
support for int8

#30 rborder closed 2 months ago
5
Allow passing of pathlib objects instead of string paths

#29 jan-engelmann closed 2 months ago
1
Genotype code wrong!

#28 liqingbioinfo closed 2 months ago
6
Increase of memory

#27 FBoyang closed 2 months ago
2
Install 2.2.9 using pip?

#26 CholoTook closed 3 years ago
5
Hangs on bed.compute()

#25 jvierstra closed 3 years ago
2
Providing a more useful example.

#24 CholoTook closed 3 years ago
1
Hi Danilo, question about writing Plink file from GEO SNP-Chip data

#23 CholoTook closed 3 years ago
5
❓ `np.nan` value from bed.compute()

#22 SamuelCahyawijaya closed 3 years ago
2
Slower performance of read_plink1_bin vs read_plink

#21 francois-a closed 3 years ago
3
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()

#20 duzc-Repos closed 3 years ago
1
Fix for Pandas 1.1.0 (ValueError: Names should be an ordered collection)

#19 francois-a closed 4 years ago
1
Pandas 1.1.0 error: ValueError: Names should be an ordered collection.

#18 francois-a closed 4 years ago
1
Speed up reading of single variants?

#17 koelling closed 3 years ago
3
Accessing and Subsetting Error

#16 amadoudiogobarry closed 4 years ago
2
genotype values issue

#15 liusy-jz closed 3 years ago
10
Saving dataframe as plink?

#14 loftusa closed 3 years ago
4
reading plink2 format?

#13 liangyy opened 4 years ago
4
Reading Data to Xarray Taking a long Time

#12 robloughnan closed 4 years ago
1
Сannot import name 'read_plink1_bin' from 'pandas_plink'

#11 kamilla0503 closed 5 years ago
1
Py3.7 with conda

#10 quattro closed 5 years ago
2
Support for additional dtypes?

#9 francois-a closed 5 years ago
2
error on importing plink data

#8 inti closed 6 years ago
2
requirements

#7 inti closed 6 years ago
3
ImportError: No module named 'pandas_plink.bed_reader'

#6 WillJStone closed 6 years ago
4
Memory explosion

#5 rmporsch closed 6 years ago
1
ImportError: No module named 'pandas_plink.bed_reader'

#4 Xparx closed 6 years ago
5
Bug - 'join' is not defined

#3 danielseaton closed 7 years ago
0
indexing of bim and fam files removed

#2 fpcasale closed 7 years ago
2
Bim and fam files are ordered by index

#1 krrome closed 7 years ago
2