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limix / struct-lmm

Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.
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data_structlmm/env_norm.txt not found #10

Closed wenzhenl closed 6 years ago

wenzhenl commented 6 years ago

It seems the test data provided missed one file env_norm.txt

rm18 commented 6 years ago

We have included an environmental matrix named env.txt which you can normalise. This can be done through the command line by setting your input variable name as EFILE0 = data_structlmm/env.txt And your output variable name as EFILE = data_structlmm/env_norm.txt You can then use the norm_env function to normalise the original input file env.txt. The normalised version of the environment matrix will be saved as env_norm.txt (this is not a file that we provide in the test data). norm_env --in $EFILE0 --out $EFILE We have recently made some changes to the package including the norm_env function, so the current documentation will not match your downloaded version of the package. I would suggest that you update your downloaded version.