linDing-group / Deep-loop

Identification of chromatin loops using deep learning
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Number of features and the combination of feature files? #1

Open hkabbech opened 3 years ago

hkabbech commented 3 years ago

Hello,

I am trying to run your code. I have been able to generate the different features (KNFC, NPSE, PCPSF and NV) and i got in output several csv files. I suppose now I have to generate a file similar to "exampleFeatureFile.csv" by combining each feature files. However, I noticed that I don't have the same number of features as it should be in input of any model (I have 399 features at each row but the models need 724 features). Could you describe more precisely how the combination of all features was done? (How many columns for each feature file? Is there a specific order when combining the file? etc.)

Thank you!