lindawangg / COVID-Net

COVID-Net Open Source Initiative
Other
1.15k stars 482 forks source link

requirement.txt is not satisfied #174

Closed datonefaridze closed 3 years ago

datonefaridze commented 3 years ago

Issue Template

Before posting, have you looked at the FAQ page?

Description

Please include a summary of the issue. Please include the steps to reproduce. List any additional libraries that are affected.

Steps to Reproduce

  1. First step
  2. Second step
  3. Third step

Expected behavior

A description of what you expected to happen.

Actual behavior

A description of what happens instead.

Environment

haydengunraj commented 3 years ago

Hi @datonefaridze ,

I believe our current requirements.txt is not minimal and may have issues - I also get an error running pip install -r requirements.txt. We'll hopefully update to fix this soon, but in the meantime try replacing requirements.txt with the following:

dicom2nifti==2.2.12
jupyter==1.0.0
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.0
matplotlib==3.2.1
nibabel==3.0.2
numpy==1.18.2
opencv-python==4.2.0.34
pandas==1.1.3
Pillow==7.1.2
pydicom==2.1.2
scikit-image==0.17.2
scikit-learn==0.22.2.post1
scipy==1.4.1
tensorboard==1.15.0
tensorflow-estimator==1.15.1
tensorflow-gpu==1.15.0
tqdm==4.46.0

I think this represents all the requirements, but let me know if this is not the case.