Fix dataset creation notebook - Githubissues

lindawangg / COVID-Net

COVID-Net Open Source Initiative

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Fix dataset creation notebook #97

Closed haydengunraj closed 3 years ago

haydengunraj commented 3 years ago

Description

Fixes #95 and adds E.Coli->pneumonia to the mapping.

The covid-chestxray-dataset repo changed the format of their "finding" field in metadata.csv, causing the notebook to parse the findings incorrectly.

Context of change

Please add options that are relevant and mark any boxes that apply.

[X] Software (software that runs on the PC)
[ ] Library (library that runs on the PC)
[ ] Tool (tool that assists coding development)
[ ] Other

Type of change

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[X] Bug fix (non-breaking change which fixes an issue)
[ ] New feature (non-breaking change which adds functionality)
[ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
[ ] This change requires a documentation update

How Has This Been Tested?

Tested by running the create_COVIDx.ipynb notebook as usual.

Checklist:

Please mark any boxes that have been completed.

[X] I have performed a self-review of my own code.
[ ] I have commented my code, particularly in hard-to-understand areas.
[ ] I have made corresponding changes to the documentation.
[X] My changes generate no new warnings.
[ ] Any dependent changes have been merged and published in downstream modules.