htslib doesn't upgrade - Githubissues

lindenb / jvarkit

Java utilities for Bioinformatics

https://jvarkit.readthedocs.io/

Other

482 stars 133 forks source link

Closed dakl closed 10 years ago

dakl commented 10 years ago

This doesn't upgrade htslib:

$ cd jvarkit
$ git pull origin
$ git submodule update
$ cd htsjdk
$ ant clean
$ ant
$ cd ..

Latest release on github is 1.119, but 1.117 is still the one present after running this.

lindenb commented 10 years ago

A submodule is linked to a fixed 'commit' and current version of jvarkit uses htsjdk https://github.com/samtools/htsjdk/tree/5a5c3af377db4a80422fde70cdca9484e81fe1a8 which is 1.117