SamViewWithMate: width one regions using BED file

[daynefiler]

First, thank you for sharing all of your work.

Subject of the issue

When trying to subset a bam file with a BED file containing single nucleotide regions, the program skips those regions.

[WARN][BedLineCodec]cannot use empty BED interval NC_000022.11 50283705 50283705 ("NC_000022.11(tab)50283705(tab)50283705"=. Skipping.

Your environment

• version of jvarkit: 174c887dd7d4b016fab5eb055b95d4ad8f2c98ec
• version of java:

  openjdk version "1.8.0_192"
  OpenJDK Runtime Environment (Zulu 8.33.0.1-linux64) (build 1.8.0_192-b01)
  OpenJDK 64-Bit Server VM (Zulu 8.33.0.1-linux64) (build 25.192-b01, mixed mode)

• the value of ${JAVA_HOME} /home/dfiler/tools/miniconda3
• which OS

  
  CentOS Linux release 7.4.1708 (Core) 
  NAME="CentOS Linux"
  VERSION="7 (Core)"
  ID="centos"
  ID_LIKE="rhel fedora"
  VERSION_ID="7"
  PRETTY_NAME="CentOS Linux 7 (Core)"
  ANSI_COLOR="0;31"
  CPE_NAME="cpe:/o:centos:centos:7"
  HOME_URL="https://www.centos.org/"
  BUG_REPORT_URL="https://bugs.centos.org/"

CENTOS_MANTISBT_PROJECT="CentOS-7" CENTOS_MANTISBT_PROJECT_VERSION="7" REDHAT_SUPPORT_PRODUCT="centos" REDHAT_SUPPORT_PRODUCT_VERSION="7"

CentOS Linux release 7.4.1708 (Core) CentOS Linux release 7.4.1708 (Core)

### Steps to reproduce
`java -jar ~/jvarkit/dist/samviewwithmate.jar -b some.bed some.bam`
where `some.bed` contains a single nucleotide region, e.g.  NC_000022.1:50283705-50283705

[lindenb]

thanks

a BED record like 'contig(tab)50283705(tab)50283705' is EMPTY . A bed record is an open-ended interval. see https://www.biostars.org/p/84686/

a one base bed would be 'contig(tab)50283704(tab)50283705"'

[daynefiler]

Thanks for your quick response!