lindenb / jvarkit

Java utilities for Bioinformatics
https://jvarkit.readthedocs.io/
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installation issue #201

Open newatil opened 2 years ago

newatil commented 2 years ago

Hello, I have a problem when installing a tool, when I run the code ./gradlew msa2vcf I get this error? Downloading https://services.gradle.org/distributions/gradle-6.7-bin.zip

Exception in thread "main" java.net.ConnectException: Connection timed out at java.net.PlainSocketImpl.socketConnect(Native Method) at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:345) at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) at java.net.Socket.connect(Socket.java:589) at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:656) at sun.security.ssl.BaseSSLSocketImpl.connect(BaseSSLSocketImpl.java:173) at sun.net.NetworkClient.doConnect(NetworkClient.java:180) at sun.net.www.http.HttpClient.openServer(HttpClient.java:432) at sun.net.www.http.HttpClient.openServer(HttpClient.java:527) at sun.net.www.protocol.https.HttpsClient.(HttpsClient.java:275) at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:371) at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1104) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:998) at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1512) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1440) at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:254) at org.gradle.wrapper.Download.downloadInternal(Download.java:78) at org.gradle.wrapper.Download.download(Download.java:63) at org.gradle.wrapper.Install$1.call(Install.java:68) at org.gradle.wrapper.Install$1.call(Install.java:48) at org.gradle.wrapper.ExclusiveFileAccessManager.access(ExclusiveFileAccessManager.java:69) at org.gradle.wrapper.Install.createDist(Install.java:48) at org.gradle.wrapper.WrapperExecutor.execute(WrapperExecutor.java:107) at org.gradle.wrapper.GradleWrapperMain.main(GradleWrapperMain.java:63) (base) [newatil@hpclogin01 jvarkit]$

Thanks for help :)

lindenb commented 2 years ago

@newatil it looks like a probleme with your web proxy. It's unrelated to jvarkit. As your sysadmin/ see https://stackoverflow.com/a/22666646/58082