Error building 'mapuniprot'

[marc-sturm]

Hi Pierre,

I get the error below when I try to build the mapuniprot tool. Other tools can be built. I'm behind a proxy, which might be the problem, but I could not find the local.mk file referenced by the documentation...

Cheers, Marc

make mapuniprot mkdir -p /mnt/SRV017/share/data/dbs/UniProt/jvarkit/src/main/generated-sources/java xjc -d /mnt/SRV017/share/data/dbs/UniProt/jvarkit/src/main/generated-sources/java -p org.uniprot "http://www.uniprot.org/support/docs/uniprot.xsd" parsing a schema...

(process:3234): GConf-WARNING **: Client failed to connect to the D-BUS daemon: //bin/dbus-launch terminated abnormally with the following error: Autolaunch error: X11 initialization failed.

GConf Error: No D-BUS daemon running

[lindenb]

I cannot do much without any error message....

[marc-sturm]

Hi Pierre,

sorry, accidentally hit the enter button. I updated the issue now :)

Cheers, Marc

Pierre Lindenbaum notifications@github.com 04.05.2015 15:21 >>>

I cannot do much without any error message.... — Reply to this email directly or view it on GitHub.

[lindenb]

are you running inside docker ? see http://stackoverflow.com/questions/29794731/running-jaxb-xjc-in-dockerfile-yields-in-gconf-error . Anyway, this is an error related to your system. I can't do much about this.

if you're working behind a proxy , you've to write the local.mk yourself.

something like:

$ cat ~/src/jvarkit-git/local.mk
http.proxy.port=1234
http.proxy.host=somewhere.org

[marc-sturm]

Hi Pierre,

thanks, it was the proxy config that was missing and the wrong version or xjc.

Thanks for the help!

Pierre Lindenbaum notifications@github.com 04.05.2015 15:49 >>>

are you running inside docker ? see http://stackoverflow.com/questions/29794731/running-jaxb-xjc-in-dockerfile-yields-in-gconf-error . Anyway, this is an error related to your system. I can't do much about this. if you're working behind a proxy , you've to write the local.mk yourself. something like: $ cat ~/src/jvarkit-git/local.mk http.proxy.port=1234 http.proxy.host=somewhere.org

— Reply to this email directly or view it on GitHub.

[lindenb]

I'm glad it works now.