vcf2hilbert

[SamMondal]

Hello Pierre, Could you please point to me a sample vcf file that will work for vcf2hilbert? I keep getting this error, for different vcf files (formats): "The input file is missing a SAM sequence dictionary."

Thanks!

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[lindenb]

The input file is missing a SAM sequence dictionary.

means that the VCF must contain a dictionary (=VCF header with lines starting with ##contig=). see 1.2.7 in https://samtools.github.io/hts-specs/VCFv4.2.pdf