Ploid pedigree class allows for the building of X, Y, and mito trees (this is already implemented in Ivan's repository). We can then do msprime simulations of these chromosomes. We will have to figure out whether lineagekit call msprime, or conversely, for this purpose.
Ploid pedigree class allows for the building of X, Y, and mito trees (this is already implemented in Ivan's repository). We can then do msprime simulations of these chromosomes. We will have to figure out whether lineagekit call msprime, or conversely, for this purpose.