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linikujp / owltools

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Add ontology trimming option to owlsim #72

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Add an option or command to remove any classes that have no (inferred) 
instances.

This can be done in owltools at the moment, but requires a few steps. E.g. you 
can make a GAF from the annotations and use --extract-ontology-subset-by-gaf, 
but this is not convenient.

This would be particularly useful for pre-calculations of the allxall attribute 
matrix

Original issue reported on code.google.com by cmung...@gmail.com on 11 Jul 2013 at 2:05