Open GoogleCodeExporter opened 9 years ago
Hi Kotoko!
Yes, this would be useful for GO. I think this should be recommended (but not
required) for an OBO Basic ontology
http://oboformat.googlecode.com/svn/trunk/doc/obo-syntax.html#6.2 and performed
by Oort.
In the interim, an additional command line option to strip these would be
useful.
Formally, for any axiom A such that
A = C SubClassOf P some D
1. Remove A
2. Test if C is returned in a reasoner query for subclasses of "P some D"
3. If returned, remove A permanently, otherwise restore
Original comment by cmung...@gmail.com
on 14 Apr 2014 at 12:49
Shouldn't the -simple versions also follow this? Don't see any reason to keep
redundancy in, and simplifying the graph would be good for browsing.
Note - this would provide a simple solution to Val's issues discussed here
http://gocwiki.geneontology.org/index.php/Ontology_meeting_2014-04-10#part_of_nu
cleus_.28or_other_top-level_CC_term.29_vs_is_a_nuclear_part & here
https://sourceforge.net/p/geneontology/ontology-requests/10757/ . Despite our
proposed resolution, she would prefer to see terms under the X-part terms
rather than as direct parts.
Original comment by dosu...@gmail.com
on 15 Apr 2014 at 9:37
BTW, this is what OWLGraphManipulator#reduceRelations() does. In the old
owltools way (without reasonner), but it works. Maybe you could add some
command line arguments to use it?
Original comment by frederic...@gmail.com
on 2 Jul 2014 at 8:33
Original issue reported on code.google.com by
kotoko.o...@gmail.com
on 12 Apr 2014 at 5:05