junit test fails for MolecularModeServer

What steps will reproduce the problem?
I was trying to install owl tools and running mvm clean package

What is the expected output? What do you see instead?

I see

Results :

Failed tests:   
testModelAnnotations(owltools.gaf.lego.server.handler.BatchModelHandlerTest): 
expected:<2> but was:<3>

Tests run: 11, Failures: 1, Errors: 0, Skipped: 0

[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] OWLTools-Parent ................................... SUCCESS [ 21.475 s]
[INFO] OWLTools-Core ..................................... SUCCESS [05:43 min]
[INFO] Lego .............................................. SUCCESS [  4.713 s]
[INFO] OWLTools-Annotation ............................... SUCCESS [01:30 min]
[INFO] OWLTools-Oort ..................................... SUCCESS [ 18.337 s]
[INFO] OWLTools-Sim ...................................... SUCCESS [ 34.007 s]
[INFO] OWLTools-Web ...................................... SUCCESS [  8.819 s]
[INFO] OWLTools-Solr ..................................... SUCCESS [ 10.176 s]
[INFO] OWLTools-Runner ................................... SUCCESS [01:22 min]
[INFO] OWLTools-NCBI ..................................... SUCCESS [  4.081 s]
[INFO] MolecularModelServer .............................. FAILURE [03:42 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 14:00 min
[INFO] Finished at: 2014-05-29T16:46:52-08:00
[INFO] Final Memory: 27M/95M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal 
org.apache.maven.plugins:maven-surefire-plugin:2.12.2:test (default-test) on 
project MolecularModelServer: There are test failures.
[ERROR] 
[ERROR] Please refer to 
/Users/mcourtot/Desktop/projects/owltools/MolecularModelServer/target/surefire-r
eports for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e 
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please 
read the following articles:
[ERROR] [Help 1] 
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :MolecularModelServer

What version of the product are you using? On what operating system?
OS 10.9.2

Please provide any additional information below.
Log reads:

-------------------------------------------------------------------------------
Test set: owltools.gaf.lego.server.handler.BatchModelHandlerTest
-------------------------------------------------------------------------------
Tests run: 11, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 200.593 sec 
<<< FAILURE!
testModelAnnotations(owltools.gaf.lego.server.handler.BatchModelHandlerTest)  
Time elapsed: 5.729 sec  <<< FAILURE!
java.lang.AssertionError: expected:<2> but was:<3>
    at org.junit.Assert.fail(Assert.java:88)
    at org.junit.Assert.failNotEquals(Assert.java:743)
    at org.junit.Assert.assertEquals(Assert.java:118)
    at org.junit.Assert.assertEquals(Assert.java:555)
    at org.junit.Assert.assertEquals(Assert.java:542)
    at owltools.gaf.lego.server.handler.BatchModelHandlerTest.testModelAnnotations(BatchModelHandlerTest.java:245)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    at java.lang.reflect.Method.invoke(Method.java:597)
    at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
    at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
    at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
    at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
    at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:48)
    at org.junit.rules.RunRules.evaluate(RunRules.java:20)
    at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
    at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
    at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
    at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
    at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
    at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
    at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
    at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
    at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
    at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:252)
    at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:141)
    at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:112)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
    at java.lang.reflect.Method.invoke(Method.java:597)
    at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
    at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
    at org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
    at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:113)
    at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:75)
Original issue reported on code.google.com by mcour...@gmail.com on 29 May 2014 at 11:52
linikujp / owltools

junit test fails for MolecularModeServer #97
