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linikujp / owltools

Automatically exported from code.google.com/p/owltools
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owslim default ICS #98

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
For the current implementation, classes are 'unknown' if they are outside of 
the closure of any annotated classes at the time of owlsim initiation. This 
conflates two things:

1. classes in HPO that have not yet been annotated (at the time of server 
initiation)
2. classes not in the version of HPO (at the time of server initiation)

For scenario 2 we have no way of knowing if it's something that should or 
shouldn't have an IC score at all (without doing something really awkward like 
an on-the-fly query of the dev version of HPO).

For scenario 1,  I suggest an option that propagates down from a selected node 
and associates the max value for all descendant nodes that have no IC 
associated. For any nodes with no IC that are not descendants, assign zero.

Original issue reported on code.google.com by cmung...@gmail.com on 28 Jul 2014 at 6:02

GoogleCodeExporter commented 9 years ago 
This issue was closed by revision r2306.

Original comment by cmung...@gmail.com on 28 Jul 2014 at 8:28