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linjc16 / R2-DDI

[BIB 2023] Official implementation of "R2-DDI: Relation-aware Feature Refinement for Drug-drug Interaction Prediction".
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Request the full dataset #1

Closed Ngqgq closed 1 year ago

Ngqgq commented 1 year ago

Using instructions on your homepage, I open a link to look for the dataset, only to be told that the page is not available . So, could you provide me with the full data set? My email address is 740308103@qq.com.

linjc16 commented 1 year ago

Thanks for pointing this out. I have update the dataset files.

The drugbank dataset can be seen in dataset folder. The twosides dataset can be download at https://figshare.com/articles/dataset/R2-DDI_Twosides_Dataset/22495666.

Ngqgq commented 1 year ago

Thank you very much for your reply. Inspired by your homepage, I have obtained this data set through the paper GMPNN-CS, but when I ran it last night, I found that the files train.a, train.b, valid.a, valid.b, train.nega and other files are missing, maybe this can be achieved through some of your code, but I can't find these training files at the moment, so could you send these files again, or tell me how to get them?

linjc16 commented 1 year ago

You can obtain them from Data Preprocessing in the README file. e.g.

python ddi_zoo/scripts/data_process/run_process_trans.py

bash ddi_zoo/scripts/data_process/run_binarize_trans.sh

Ngqgq commented 1 year ago

Thanks for your help,I'll try it later.

------------------ 原始邮件 ------------------ 发件人: "Jiacheng @.>; 发送时间: 2023年4月3日(星期一) 晚上9:28 收件人: @.>; 抄送: @.>; @.>; 主题: Re: [linjc16/R2-DDI] Request the full dataset (Issue #1)

You can obtain them from Data Preprocessing in the README file. e.g.

python ddi_zoo/scripts/data_process/run_process_trans.py

bash ddi_zoo/scripts/data_process/run_binarize_trans.sh

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