Closed cmungall closed 1 year ago
Discussing with @hsolbrig
Currently default_curi_maps use https://pypi.org/project/curieutil/ which fetches from prefixcommons
we should get prefixes from bioregistry
eg.
>>> from bioregistry import get_iri, get_prefix_map >>> prefix_map = get_prefix_map(priority=["obofoundry"]) >>> prefix_map['pato'] 'http://purl.obolibrary.org/obo/PATO_' >>> get_iri('skos','') 'http://www.w3.org/2004/02/skos/core#'
We need bioregistry to have the correct casing first
Related issues: https://github.com/mapping-commons/sssom-py/issues/247
See also #502
done: https://github.com/linkml/linkml-runtime/pull/231
Discussing with @hsolbrig
Currently default_curi_maps use https://pypi.org/project/curieutil/ which fetches from prefixcommons
we should get prefixes from bioregistry
eg.
We need bioregistry to have the correct casing first