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linkml / schema-automator

Automated assistance for the schema development lifecycle
https://linkml.io/schema-automator/
BSD 3-Clause "New" or "Revised" License
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Lib (urllib3) fail from local poetry build #123

Open dosumis opened 10 months ago

dosumis commented 10 months ago

Tried local Poetry install as I have been unable to get any install via pip to work (I got as far as an install with this bug when I try to run #122).

Trying to run schemauto with Poetry install => 

 schema-automator % ~/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/bin/schemauto ../cell-annotation-schema/BICAN_schema.json 
Traceback (most recent call last):
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/bin/schemauto", line 3, in <module>
    from schema_automator.cli import main
  File "/Users/do12/Documents/GitHub/schema-automator/schema_automator/__init__.py", line 1, in <module>
    from schema_automator.annotators import *
  File "/Users/do12/Documents/GitHub/schema-automator/schema_automator/annotators/__init__.py", line 1, in <module>
    from schema_automator.annotators.schema_annotator import SchemaAnnotator
  File "/Users/do12/Documents/GitHub/schema-automator/schema_automator/annotators/schema_annotator.py", line 7, in <module>
    from linkml_runtime.linkml_model import SchemaDefinition, Element, PermissibleValue, ClassDefinition, SlotDefinition
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/linkml_runtime/__init__.py", line 3, in <module>
    from linkml_runtime.utils.schemaview import SchemaView
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/linkml_runtime/utils/schemaview.py", line 11, in <module>
    from linkml_runtime.utils.namespaces import Namespaces
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/linkml_runtime/utils/namespaces.py", line 4, in <module>
    from prefixcommons import curie_util
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/prefixcommons/__init__.py", line 4, in <module>
    from .curie_util import expand_uri, contract_uri, NoPrefix
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/prefixcommons/curie_util.py", line 5, in <module>
    import requests
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/requests/__init__.py", line 43, in <module>
    import urllib3
  File "/Users/do12/Library/Caches/pypoetry/virtualenvs/schema-automator-coqgtRXk-py3.9/lib/python3.9/site-packages/urllib3/__init__.py", line 38, in <module>
    raise ImportError(
ImportError: urllib3 v2.0 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with LibreSSL 2.8.3. See: https://github.com/urllib3/urllib3/issues/2168