search

linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
131 stars 40 forks source link

Formulate overview table from existing output without the need to rerun the analysis #108

Closed nohayoussef closed 1 year ago

nohayoussef commented 1 year ago

Good afternoon, I successfully ran the analysis that resulted in the production of hmm.out, diamond.out, and ecami.out in the output folder. A computer problem (on my end, not with the program) prevented the final overview table from being made. Is there a way I can generate this table with the outputs I have already without the need to go back and repeat the analysis? It took so long to finish. Thanks

linnabrown commented 1 year ago

We did not have this setting. We can add this feature this weekend.

nohayoussef commented 1 year ago

We did not have this setting. We can add this feature this weekend.

That would be very much appreciated. Thank you.

linnabrown commented 1 year ago

@nohayoussef Hi, we will update dbcan v3 to dbcan v4 in this weekend, which does not include eCAMI but another new tool so there is no slow issue.

linnabrown commented 1 year ago

We now have run_dbcan4.0 which replace eCAMI with dbCAN_sub. Please check our newest code. Thanks a lot!