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linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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dbCAN-sub error #126

Closed chandnisidhu closed 11 months ago

chandnisidhu commented 11 months ago

Hi,

I'm encountering an error while trying to run dbCAN-sub, and it appears to be related to the output generation. Any assistance you could provide would be greatly appreciated.

Best,

Chandni

Error:

`$run_dbcan compiled.faa protein --out_dir output_test -t dbcansub

*3. dbCAN_sub start*****

ID count: 195 total time: 120.3644289970398

*3. dbCAN_sub end*****

Traceback (most recent call last): File "/Users/csidhu/miniconda3/envs/run_dbcan/bin/run_dbcan", line 10, in sys.exit(cli_main()) File "/Users/csidhu/miniconda3/envs/run_dbcan/lib/python3.8/site-packages/dbcan_cli/run_dbcan.py", line 883, in cli_main run(inputFile=args.inputFile, inputType=args.inputType, cluster=args.cluster, dbCANFile=args.dbCANFile, File "/Users/csidhu/miniconda3/envs/run_dbcan/lib/python3.8/site-packages/dbcan_cli/run_dbcan.py", line 290, in run with open(f"{outPath}dbsub.out") as f: FileNotFoundError: [Errno 2] No such file or directory: 'output_test/dbsub.out'`

linnabrown commented 11 months ago

Hi Chandni, Thanks for using our tool. I found that you only specify using dbcansub right? If you did not specify the tool, did you still confront this issue? If possible, could you please provide ur input data to us? We would like to replicate this issue with ur data on our end. Thanks a lot!

chandnisidhu commented 11 months ago

Hi,

The error has been resolved. There was some issue in our server.

Thank you for your prompt response.

Best,

Chandni