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linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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Updated PUL.faa file #135

Closed jlubin24 closed 5 months ago

jlubin24 commented 7 months ago

Hello Is there an updated PUL.faa file with all 673 PULs available to download?

thanks

linnabrown commented 7 months ago

Hi @yinlabniu could you answer this question? Thanks!

azureycy commented 6 months ago

Hello Is there an updated PUL.faa file with all 673 PULs available to download?

thanks

Hi, we have uploaded the updated file PUL_12112023.faa with all PULs available to download. Thank you.

linnabrown commented 6 months ago

@azureycy Hi Yuchen, thank you for answering this question. I would like to know whether the new version of PUL fasts file can replace the original one in our database downloading command image

azureycy commented 6 months ago

Hi Le, I can change the new file name to the original name if it’s needed.

Best regards, Yuchen Yan

From: Le (Lena) Huang @.> Sent: Tuesday, December 12, 2023 6:41:07 PM To: linnabrown/run_dbcan @.> Cc: azureycy @.>; Mention @.> Subject: Re: [linnabrown/run_dbcan] Updated PUL.faa file (Issue #135)

@azureycyhttps://github.com/azureycy Hi Yuchen, thank you for answering this question. I would like to know whether the new version of PUL fasts file can replace the original one in our database downloading command 06973DAF-C518-4D23-8EE0-05DFD64CC67C.jpeg (view on web)https://github.com/linnabrown/run_dbcan/assets/9990190/2b732e67-e569-4fed-abfe-698e0795feaa

— Reply to this email directly, view it on GitHubhttps://github.com/linnabrown/run_dbcan/issues/135#issuecomment-1853084582, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AVVGNXYQFNTOSULRVTDTCYTYJD2SHAVCNFSM6AAAAAA7VESLYOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNJTGA4DINJYGI. You are receiving this because you were mentioned.Message ID: @.***>

linnabrown commented 6 months ago

@azureycy Hi Yuchen, you don't need to change it since I already updated readme.md. Thank you very much!

linnabrown commented 5 months ago

Hi @azureycy , please inform me when there is updated version of PUL.faa in the future, or you can PR in the database installation section in our readthedoc. Thank you very much!