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linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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multiple genomes in one file or separate files? #139

Closed Jigyasa3 closed 6 months ago

Jigyasa3 commented 7 months ago

Hi,

I wanted to confirm if I am running run_dbcan on multiple genomes, can they be in a single fasta file with unique headers or do the genomes have to be in separate fasta files?

Looking forward to your reply. Regards, Jigyasa

yinlabniu commented 7 months ago

They can be in the same file as long as the seq ids are unique. Yanbin

From: Jigyasa Arora @.> Sent: Thursday, December 7, 2023 10:34 PM To: linnabrown/run_dbcan @.> Cc: Subscribed @.***> Subject: [linnabrown/run_dbcan] multiple genomes in one file or separate files? (Issue #139)

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Hi,

I wanted to confirm if I am running run_dbcan on multiple genomes, can they be in a single fasta file with unique headers or do the genomes have to be in separate fasta files?

Looking forward to your reply. Regards, Jigyasa

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Jigyasa3 commented 7 months ago

thank you!