search

linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
130 stars 40 forks source link

Database update but code not update #140

Closed trx296554555 closed 6 months ago

trx296554555 commented 6 months ago

Hi First and foremost, I would like to express my sincere appreciation for your work. Your project has been immensely helpful to me.

I noticed, however, that while your README file recommends updating the database version to fam-substrate-mapping-08012023.tsv , the code itself still specifies an older version. This inconsistency has led to some confusion and potential compatibility issues. https://github.com/linnabrown/run_dbcan/blob/9721d256a2b56416de66d42a7ffd9d58ed88c21e/dbcan_cli/run_dbcan.py#L289C39-L289C39

Thank you once again for your valuable contribution, and I look forward to your response regarding this matter.

Best regards, Robin

linnabrown commented 6 months ago

Sorry about that. This is our hardcoding issue. We will resolve it asap in the updated package.

linnabrown commented 6 months ago

This issue has been resolved in version 4.1.0. We will put new version in 24 hours.