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linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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thread creation failed Fatal exception (source file esl_threads.c, line 139): thread creation failed #163

Closed Panda-smile closed 2 months ago

Panda-smile commented 4 months ago

image

I would like to ask how to solve this situation? slurm-117464.txt

!/bin/bash

SBATCH -J cazy

SBATCH -p batch

SBATCH -N 5

SBATCH --ntasks-per-node=16

SBATCH --mem=240GB

source ~/miniconda3/etc/profile.d/conda.sh conda activate /public/home/zhanglj/miniconda3/envs/dbcan cd /mnt/hpc/home/zhanglj/squeezemetatrans/shotguntrans/results/cazy

/public/home/zhanglj/miniconda3/envs/dbcan/bin/run_dbcan 03.shotguntrans.faa protein \ --dbcan_thread 16 --tf_cpu 16 --stp_cpu 16 -c 08.shotguntrans.gff --cgc_substrate \ --hmm_cpu 16 --out_dir ./ --dia_cpu 16 --db_dir /public/home/zhanglj/CazyDB/db \ --use_signalP=TRUE -sp /public/home/zhanglj/CazyDB/signalDB/signalp-4.1/signalp -g all

erro list： thread creation failed Fatal exception (source file esl_threads.c, line 139): thread creation failed Fatal exception (source file esl_threads.c, line 139): thread creation failed Fatal exception (source file esl_threads.c, line 139): thread creation failed Fatal exception (source file esl_threads.c, line 139): Fatal exception (source file esl_threads.c, line 139): thread creation failedthread creation failed

ZhengJinfang1220 commented 4 months ago

Your log file shows the error happened when running HMMdbCAN-HMM database, we have fixed the bug in the updated version.

Panda-smile commented 3 months ago

Thanks a lot ， i will try it

发自我的iPhone

------------------ Original ------------------ From: ZhengJinfang1220 @.> Date: Thu,Mar 7,2024 9:45 AM To: linnabrown/run_dbcan @.> Cc: jordan @.>, Author @.> Subject: Re: [linnabrown/run_dbcan] thread creation failed Fatal exception(source file esl_threads.c, line 139): thread creation failed (Issue #163)

Your log file shows the error happened when running HMMdbCAN-HMM database, we have fixed the bug in the updated version.

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linnabrown commented 2 months ago

@Panda-smile Do you still have question? If not, please close with comment. Thanks