What are "Camers" in the hotpep README

linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

http://bcb.unl.edu/dbCAN2

GNU General Public License v3.0

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What are "Camers" in the hotpep README #72

Open Rob-murphys opened 3 years ago

Rob-murphys commented 3 years ago

In the hotpep README you have the following:

[hits] = integer > 0. Represents the minimum number of unique camers found to annotate a gene.

What are camers. Is it perhaps a different way of spelling k-mers?

Secondly, what are you recomended default setting for hits and freq for running the hotpep python edition with train_many_organisms_many_families.py on annotated fungal protein fastas.

linnabrown commented 3 years ago

I will answer your questions in two days. Sorry I was busy.