README lists incorrect argument names

linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

http://bcb.unl.edu/dbCAN2

GNU General Public License v3.0

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Closed acvill closed 3 years ago

acvill commented 3 years ago

Thanks for the great tool! Small comment:

The README currently lists the following arguments for Hotpep parameters

--hot_hits
--hot_freq
--hot_cpu

However, the dbCAN2 driver script help file (run-dbcan v2.0.11) specifies the names for the same arguments differently

--hotpep_hits
--hotpep_freq
--hotpep_cpu

Using the shorter names throws an error when calling run_dbcan.py.

linnabrown commented 3 years ago

Sorry. This inconsistence is resolved. Thanks you so much for indicating this.