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linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
http://bcb.unl.edu/dbCAN2
GNU General Public License v3.0
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ModuleNotFoundError: No module named 'dbcan.utils' #88

Closed rishibhandari63 closed 2 years ago

rishibhandari63 commented 2 years ago

I followed the step-by-step process for the installation of the new version except for SignalP installation. After the installation, when I run the code for the test file using run_dbcan EscheriaColiK12MG1655.fna prok --out_dir output_EscheriaColiK12MG1655

And i get the following error

File "/home/aubrrb/.conda/envs/dbcan/bin/run_dbcan", line 5, in from dbcan_cli.run_dbcan import cli_main File "/home/aubrrb/.conda/envs/dbcan/lib/python3.8/site-packages/dbcan_cli/run_dbcan.py", line 23, in from dbcan.utils import simplify_output, cgc_finder ModuleNotFoundError: No module named 'dbcan.utils'

Can you please let me know what went wrong?

linnabrown commented 2 years ago

That sounds strange. I did not meet this problem. And we can install the pkg and run the example command line successfully in the new desktop or server.

linnabrown commented 2 years ago

We put a new version for Bioconda. Do you still have this problem? @bhandari63