[Errno 2] No such file or directory: 'output_EscheriaColiK12MG1655/hmmer.out'

[RinaYona]

Hi,

I set up the run_dbcan in my Mac and tested using “$ run_dbcan EscheriaColiK12MG1655.faa prok --out_dir output_EscheriaColiK12MG1655”. However, the error code was shown such as here Traceback (most recent call last): File "/Users//virtualenvs/run_dbcan/bin/run_dbcan", line 8, in sys.exit(cli_main()) File "/Users//virtualenvs/run_dbcan/lib/python3.9/site-packages/dbcan_cli/run_dbcan.py", line 224, in cli_main with open(outDir+prefix+'hmmer.out') as f: FileNotFoundError: [Errno 2] No such file or directory: 'output_EscheriaColiK12MG1655/hmmer.out'

In output file, hmmer file doesn’t exist. And the results in the other diamond, eCAMI, prodigal are not included in their own files.

Could you give me any idea?

[linnabrown]

Thank you for using our tool. How did you install this package?

[linnabrown]

run_dbcan EscheriaColiK12MG1655.fna prok --out_dir output_EscheriaColiK12MG1655

with prok prameter, you should use .fna, not .faa

[RinaYona]

Thank you for replying. As you mention, I replaced .fna from faa and the run_dbcan worked without any trouble. I might mistake typing.

Thanks