Docker image does not contain recent eCAMI bug fixes

linnabrown / run_dbcan

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

http://bcb.unl.edu/dbCAN2

GNU General Public License v3.0

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Docker image does not contain recent eCAMI bug fixes #93

Closed mperisin-lallemand closed 2 years ago

mperisin-lallemand commented 2 years ago

Hi, I have been using the haidyi/run_dbcan docker image and it's been working great. I did notice that the image is behind in commits compared to the github repository and the 3.0.4 package, so I had to manually make those edits that were merged in: https://github.com/linnabrown/run_dbcan/pull/91. I'm not sure if there is a new docker image to come, so just wanted to post this for your awareness. Thanks!

linnabrown commented 2 years ago

Hi, Thanks for using our tool. We have updated the code to solve #91 in v3.0.4. Docker file don't need to update since docker command always download the most recent dbcan package from pypi (It will install v3.0.4 according to this command https://github.com/linnabrown/run_dbcan/blob/e5e5a971e11e1a313816599cb0fe5b14e551c387/docker/Dockerfile#L10). So you don't need to worry about that. Thanks for catching up this.