linnarsson-lab / FISHscale

Spatial analysis of FISH data
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Multidiataset visualize() #16

Closed larsborm closed 2 years ago

larsborm commented 2 years ago
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
/tmp/ipykernel_1125800/2806952897.py in <module>
----> 1 md.visualize()

~/storage/Documents/FISHscale/utils/dataset.py in visualize(self, columns, width, height, show_axis, color_dic, x, y, c)
    725         """        
    726 
--> 727         if self.color_dict:
    728             color_dic = self.color_dict
    729 

~/storage/Documents/FISHscale/visualization/primitiveVis_open3dv2.py in __init__(self, dataset, columns, width, height, show_axis, x_alt, y_alt, c_alt, plot_type)
    100             for x in self.dataset:
    101                 self.dic_pointclouds['File'].append(str(x.filename))
--> 102             self.pass_multi_data()
    103 
    104         self.show_axis= show_axis

~/storage/Documents/FISHscale/visualization/primitiveVis_open3dv2.py in pass_multi_data(self)
    159 
    160         if self.c_alt != {}:
--> 161             for c in self.c_alt:
    162                 #unique_ca = np.unique(self.c_alt[c])
    163                 self.dic_pointclouds[c]= self.c_alt[c]

TypeError: 'NoneType' object is not iterable
larsborm commented 2 years ago

Alejandro fixed it.