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linnarsson-lab / adolescent-mouse

Analysis pipeline for the adolescent mouse nervous system project
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Where does the 'curated_L2' come from? #5

Open XiHuYan opened 3 years ago

XiHuYan commented 3 years ago

In the adolescent-mouse/adolescent_L3/Cluster_L3.py, you opened the 'curated_L2' directory as following: 

class ClusterL3(luigi.Task):
    """
    Level 3 clustering of the adolescent dataset
    """
    target = luigi.Parameter()  # e.g. Hindbrain_Inhibitory
    n_enriched = luigi.Parameter(default=500)  # Number of enriched genes per cluster to use for manifold learning

    def requires(self) -> Iterator[luigi.Task]:
        tissues: List[str] = []
        for fname in os.listdir(os.path.join(am.paths().build, "curated_L2")):   # curated_L2, ??????
            if not fname.startswith("L2"):
                continue
            tissue = fname.split("_")[2]

But I can't find any information that describes how 'curated_L2' directory is created. Could you explain how 'curated_L2' is created and what are the files in this directory?