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linnarsson-lab / cytograph-dev

Algorithms for analysis of very large single-cell RNA-seq datasets
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Change the argument ``tissue`` with ``pool`` #5

Closed gioelelm closed 6 years ago

gioelelm commented 6 years ago

I open this issue here since might related to both adolescent-mouse and development-mouse pipelines.

Many of luigi.Tasks accept as main parameter --tissue, I propose to change the name with the more general --pool, since what it is reading is the Pool column of the pooling_sepcification.tab filem and tissue is confusing for the context we use it in development.