Closed JobLeonard closed 6 years ago
Yes, correct. The only use for it now is to extract loom files for the server.
/Sten
-- Sten Linnarsson, PhD Professor of Molecular Systems Biology Karolinska Institutet Unit of Molecular Neurobiology Department of Medical Biochemistry and Biophysics Scheeles väg 1, 171 77 Stockholm, Sweden +46 8 52 48 75 77 (office) +46 70 399 32 06 (mobile)
On 22 Oct 2017, at 17:49, Job van der Zwan notifications@github.com wrote:
Am I correct in understanding that the loom CLI tool is officially deprecated, not maintained, and not used anywhere in the pipeline other than serving the viewer? Does that mean I can safely strip anything non-viewer related, so stuff like creating Loom files from other files, uploading to a server, using BackSPIN, and so on?
I'd like to do some code clean-up on the Python side of the loom-viewer code, and there's a lot of old stuff I haven't looked at in over a year and I don't know what is and isn't relevant at this stage.
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Time to do some spring autumn cleaning!
I assume loom_pipeline.py
can be deleted as a whole?
Yes!
-- Sten Linnarsson, PhD Professor of Molecular Systems Biology Karolinska Institutet Unit of Molecular Neurobiology Department of Medical Biochemistry and Biophysics Scheeles väg 1, 171 77 Stockholm, Sweden<x-apple-data-detectors://1/0> +46 8 52 48 75 77<tel:+46%208%2052%2048%2075%2077> (office) +46 70 399 32 06<tel:+46%2070%20399%2032%2006> (mobile)
25 okt. 2017 kl. 15:49 skrev Job van der Zwan notifications@github.com<mailto:notifications@github.com>:
I assume loom_pipeline.py can be deleted as a whole?
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Am I correct in understanding that the
loom
CLI tool is officially deprecated, not maintained, and not used anywhere in the pipeline other than serving the viewer? Does that mean I can safely strip anything non-viewer related, so stuff like creating Loom files from other files, uploading to a server, using BackSPIN, and so on?I'd like to do some code clean-up on the Python side of the
loom-viewer
code, and there's a lot of old stuff I haven't looked at in over a year and I don't know what is and isn't relevant at this stage.