Import cellranger folder incl. t-SNE and PCA

linnarsson-lab / loom-viewer

Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format

BSD 2-Clause "Simplified" License

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Closed slinnarsson closed 7 years ago

slinnarsson commented 8 years ago

Make sure from_cellranger works with a fully standard cellranger outs folder.
Parse and include t-SNE and PCA from the cellranger pipeline (to avoid duplicating the effort)
Parse and include the k-means clusters from cellranger