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linnarsson-lab / loompy

Python implementation of the Loom file format - http://loompy.org
BSD 2-Clause "Simplified" License
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Error with loompy.combine while concatenating Velocyto output files #150

Closed shabs24 closed 3 years ago

shabs24 commented 3 years ago

I get following error while combining the loom files from RNA velocity

WARNING:root:╭── 'batch_scan_layers' is deprecated. Use 'scan' instead WARNING:root:╰──> at /xxx/xxx/.local/lib/python3.8/site-packages/loompy/loompy.py, line 465

Here is the code: import loompy files=['file1.loom','file2.loom'] loompy.combine(files,"outfile.loom",key="Accession")

I have tried with multiple files. I am using loompy version 3.06

Any help or suggestions will be appreciated!!

Thanks,

shabs24 commented 3 years ago

It is just a warning, so I guess not an issue!