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linnarsson-lab / loompy

Python implementation of the Loom file format - http://loompy.org
BSD 2-Clause "Simplified" License
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Metadata.tab file for multiome datasets (snRNA+ATAC-Seq) #159

Open alevax opened 2 years ago

alevax commented 2 years ago

Hi,

for datasets out of the snRNA-Seq+ATAC-Seq (multiome data) is still fine to use these parameters for the metadata.tab file:

name technology targetnumcells XX013 10xv3 10000

or should the technology field be updated with something else?

I see that from 8K cells, only about 1,5K are in output (where the same sample sequenced on normal 10x chemistry v3 I get about 5K cells from 8,5K that I start with.

Thanks, Alessandro.

Lei-Guo commented 1 year ago

Having the same issue. It's been 2 years and still no answer for this question.