For other package like velocyto, there was discussion regarding how mitochondrial genes were not taken into account by default (https://github.com/velocyto-team/velocyto.py/issues/318). Anyone wouldn't mind commending on the handling of mitochrondial genes for loom file generated by loompy?
Also, would anyone mind clarifying the following points regarding the command below?
Thank you so much for your help!
1kPBMC.loom is the name of the file we want to name the output, which will be placed in the working directory
Hi there,
For other package like velocyto, there was discussion regarding how mitochondrial genes were not taken into account by default (https://github.com/velocyto-team/velocyto.py/issues/318). Anyone wouldn't mind commending on the handling of mitochrondial genes for loom file generated by loompy?
Also, would anyone mind clarifying the following points regarding the command below?
Thank you so much for your help!
My code in the script job: