linsalrob / PhiSpy

Prediction of prophages from bacterial genomes
MIT License
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Working #11

Closed deprekate closed 5 years ago

deprekate commented 5 years ago

I fixed parts of the code for python3, and a large indent error in makeTest (see the line with the comment '# write in file for one window').

The current threshold is max(km_center_1, km_center_2), but should probably be average instead, to be more forgiving.

I also added the _make_train routine