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linsalrob / PhiSpy

Prediction of prophages from bacterial genomes
MIT License
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Fixed error of using wrong variable to set cutoff for min number of genes for a prophage #22

Closed deprekate closed 4 years ago

deprekate commented 5 years ago

I am pretty sure the wrong parameter got used in evaluation.py for setting the minimum number of genes required to call a region a prophage. This was due to the previous convuloted methods of passing positional arguements throgh multiple functions; which we got rid of in favor of a single **kwargs

Subsequently we might also change the --number flag to something more descriptive, like --min_genes or soemthing.