Closed snehamurthy21 closed 3 years ago
Hi,
sure but could you provide information about the PhiSpy version you're using and the version of Biopython package you have installed?
You can get this information by running:
PhiSpy.py --version
and
pip3 list | grep biopython
Thanks, Przemek
PhiSpy.py --version 4.1.22 pip3 list | grep biopython biopython 1.78
Great, thanks!
PhiSpy v4.1.22 does not support Biopython v1.78 and above.
You can either downgrade Biopython to v1.77 by running
pip3 install biopython==1.77
or
install the current PhiSpy version from GitHub repo - v4.2.5, which works well with Biopython v.1.78.
Best, Przemek
Thank you for your help It worked great with biopython==1.77
That's great!
Hi
i am getting this error when i run with output choice 255
/.local/lib/python3.8/site-packages/Bio/SeqIO/InsdcIO.py", line 744, in _write_the_first_line raise ValueError("missing molecule_type in annotations") ValueError: missing molecule_type in annotations
Could you please help me resolve it